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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VPS36, vacuolar protein sorting 36 homolog (S. cerevisiae)
Sequence ID:NM_016075
Entrez Gene ID:51028
Ensembl ID:ENSG00000136100

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q14.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 52989429 - 53004639

 Exon Info From UCSC:
NM_016075

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4814999Full LengthBC037279vacuolar protein sorting 36 homolog (S. cerevisiae)
5764280Full LengthBC050439vacuolar protein sorting 36 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057159  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016075 NP_057159 Q86VN1 Vps36

Related Sequences

 
mRNAGenPeptSwissProt
AF151903 AAD34140 Q86VN1
BC037279 AAH37279 Q86VN1
BC050439 AAH50439 Q86VN1
AK023182 BAB14451 Q86VN1
AB208956 BAD92193 Q59H03
AK289740 BAF82429 Q86VN1
CR933653 CAI45953 Q86VN1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VPS36 NP_057159 M.musculus Vps36 70160 Gene Info NP_081614 96
R.norvegicus Vps36 290851   NP_001099562 96
D.melanogaster Vps36 39523   NP_648660 47
A.gambiae AgaP_AGAP004755 3289846   XP_554602 45
C.elegans tag-318 179520   NP_505798 43
A.thaliana AT5G04920 830374   NP_196112 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)