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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. APH1A, anterior pharynx defective 1 homolog A (C. elegans)
Sequence ID:NM_001077628
NM_001243771
NM_001243772
NM_016022
NR_045033
NR_045034
NR_045035
RefSeqGene ID:NG_029952
Entrez Gene ID:51107
Ensembl ID:ENSG00000117362

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.13-q31.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 150237803 - 150241311

 Exon Info From UCSC:
NM_001077628
NM_016022

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3162330Full LengthBC008732anterior pharynx defective 1 homolog A (C. elegans)
3356401Full LengthBC015568anterior pharynx defective 1 homolog A (C. elegans)
3457593Full LengthBC001230anterior pharynx defective 1 homolog A (C. elegans)
4040230Full LengthBC009501anterior pharynx defective 1 homolog A (C. elegans)
4177580Full LengthBC017699anterior pharynx defective 1 homolog A (C. elegans)
4420942Full LengthBC020590anterior pharynx defective 1 homolog A (C. elegans)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057106  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001077628 NP_001071096 Q96BI3  
NM_001243771 NP_001230700    
NM_001243772 NP_001230701    
NM_016022 NP_057106   Aph-1

Related Sequences

 
mRNAGenPeptSwissProt
AF151835 AAD34072 Q96BI3
BC001230 AAH01230 Q96BI3
BC008732 AAH08732 Q96BI3
BC009501 AAH09501 Q96BI3
BC015568 AAH15568 Q96BI3
BC017699 AAH17699 Q96BI3
BC020590 AAH20590 Q96BI3
AY113698 AAM61955 Q96BI3
AY113699 AAM61956 Q96BI3
AF508787 AAN63816 Q96BI3
AY358951 AAQ89310 Q96BI3
HQ447145 ADQ31632  
JF432669 ADZ15886  
JF432870 ADZ16087  
AK075295 BAC11529 Q96BI3
AK027879 BAG51389 Q96BI3
AK075452 BAG52142 B3KQT0
AK297680 BAG60040 B4DMX8
AK298832 BAG60962 B4DQK0
AK298876 BAG60993 B4DQN1
AK300640 BAG62329 B4DUG7
AX775955 CAE11677  
AX775957 CAE11678 Q96BI3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens APH1A NP_001071096 R.norvegicus Aph1a 365872   NP_001014277 99
M.musculus Aph1a 226548 Gene Info NP_666246 99
D.melanogaster aph-1 33467   NP_608710 49
A.gambiae AgaP_AGAP009816 1279231   XP_318923 47
C.elegans aph-1 172747   NP_492469 36
A.thaliana AT2G31440 817702   NP_565724 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)