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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GET4, golgi to ER traffic protein 4 homolog (S. cerevisiae)
Sequence ID:NM_015949
Entrez Gene ID:51608
Ensembl ID:ENSG00000239857

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7p22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 916300 - 935398

NM_015949 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1247916190916436
248326925692925770
327408926205926286
409558927006927155
559697930564930702
698838931914932054
839914933376933451
915987933535933607
9882088934970936070

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3546669Full LengthBC003550chromosome 7 open reading frame 20

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057033  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015949 NP_057033 Q7L5D6 DUF410

Related Sequences

 
mRNAGenPeptSwissProt
AF132954 AAD27729 Q7L5D6
BC003550 AAH03550 Q7L5D6
AK024305 BAG51289 Q7L5D6
AK097899 BAG53546 Q7L5D6
AK125863 BAG54258 Q7L5D6
AL133014 CAB61355 Q7L5D6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GET4 NP_057033 M.musculus Get4 67604 Gene Info NP_080545 95
R.norvegicus Get4 288518   NP_001156792 95
A.gambiae AgaP_AGAP000119 1272148   XP_311026 48
D.melanogaster CG9853 40557   NP_649464 40
A.thaliana AT5G63220 836442   NP_201127 35
S.pombe SPCC1672.12c 2538767   NP_587883 34
C.elegans cee-1 175658   NP_498034 32
S.cerevisiae GET4 854335   NP_014807 32
N.crassa NCU01190 3877679   XP_961556 25

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)