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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. HNRNPU, Heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
Sequence ID:NM_031844
NM_004501
Entrez Gene ID:3192
Ensembl ID:ENSG00000153187

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q44Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 245016960 - 245027827

 Exon Info From UCSC:
NM_031844
NM_004501

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2900876Full LengthBC003367heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
2966453Full LengthBC003621heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
4857112Full LengthBC015782heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
4993703Full LengthBC024767heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
3953856IncompleteBC034925heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)
4299389IncompleteBC007950heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004492  NP_114032  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004501 NP_004492   SPRY
SAP
NM_031844 NP_114032 Q00839 SPRY
SAP

Related Sequences

 
mRNAGenPeptSwissProt
AF068846 AAC19382 Q00839
BC003367 AAH03367 Q00839
BC003621 AAH03621 Q00839
BC007950 AAH07950 Q00839
BC015782 AAH15782 Q96BA7
BC024767 AAH24767 Q00839
BC034925 AAH34925 Q00839
AF461014 AAP97707 Q7Z4Q5
DQ893316 ABM84242  
DQ896631 ABM87630  
EU831555 ACE86474  
EU831468 ACE87155  
AK126868 BAG54384 B3KX72
AK297119 BAG59625 B4DLR3
X65488 CAA46472 Q00839

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HNRNPU NP_114032 M.musculus Hnrnpu 51810 Gene Info NP_058085 97
R.norvegicus Hnrnpu 117280   NP_476480 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)