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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. A4GALT, Alpha 1,4-galactosyltransferase
Sequence ID:NM_017436
RefSeqGene ID:NG_007495
Entrez Gene ID:53947

Database Links

UniGeneEntrez GeneOMIMHPRDSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 43088126 - 43091583

NM_017436 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1618914308812743090002
189220324309149643091636
203321064311680243116875

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3913851Full LengthBC017068alpha 1,4-galactosyltransferase
6161307Full LengthBC055286alpha 1,4-galactosyltransferase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_059132  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_017436 NP_059132 Q9NPC4 EC 2.4.1.228 Gly_transf_sug
Gb3_synth

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC017068 AAH17068 Q9NPC4 EC 2.4.1.228
BC055286 AAH55286 Q5D079  
DQ891619 ABM82545    
DQ894811 ABM85737    
AB037883 BAA95915 Q9NPC4 EC 2.4.1.228
AK312927 BAG35771 Q9NPC4 EC 2.4.1.228
AJ245581 CAB93532 Q9NPC4 EC 2.4.1.228

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens A4GALT NP_059132 R.norvegicus A4galt 63888   NP_071576 81
M.musculus A4galt 239559 Gene Info NP_001004150 78
A.gambiae AgaP_AGAP008258 1277725   XP_317211 35
A.gambiae AgaP_AGAP008260 3291688   XP_555205 34
A.gambiae AgaP_AGAP008259 4578099   XP_001237894 34
D.melanogaster alpha4GT1 33512   NP_608737 34
D.melanogaster alpha4GT2 43124   NP_651434 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)