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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC4A11, solute carrier family 4, sodium borate transporter, member 11
Sequence ID:NM_001174089
NM_001174090
NM_032034
RefSeqGene ID:NG_017072
Entrez Gene ID:83959
Ensembl ID:ENSG00000088836

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CORNEAL DYSTROPHY, FUCHS ENDOTHELIAL, 4 
CORNEAL ENDOTHELIAL DYSTROPHY 2, AUTOSOMAL RECESSIVE 
CORNEAL ENDOTHELIAL DYSTROPHY AND PERCEPTIVE DEAFNESS 

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 3208062 - 3218373

 Exon Info From UCSC:
NM_001174089
NM_001174090
NM_032034

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40035522Full LengthBC110540solute carrier family 4, sodium borate transporter, member 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_114423  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001174089 NP_001167560    
NM_001174090 NP_001167561    
NM_032034 NP_114423 Q8NBS3 HCO3_cotransp

Related Sequences

 
mRNAGenPeptSwissProt
BC110540 AAI10541 Q8NBS3
BC110541 AAI10542 Q8NBS3
AF336127 AAK16734 Q8NBS3
AK075303 BAC11536 Q8NBS3
AK296508 BAG59140 B4DKC8
AK296760 BAG59341 B4DKX9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC4A11 NP_001167561 R.norvegicus Slc4a11 311423   NP_001101245 87
M.musculus Slc4a11 269356 Gene Info NP_001074631 87
C.elegans abts-3 174024   NP_495228 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)