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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SNRPF, small nuclear ribonucleoprotein polypeptide F
Sequence ID:NM_003095
Entrez Gene ID:6636
Ensembl ID:ENSG00000139343

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q23.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 96252746 - 96259849

NM_003095 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11469625270896252853
1472729625494596255070
2733379625910196259165
3387919625978296260235

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3051263Full LengthBC002505small nuclear ribonucleoprotein polypeptide F
5176590Full LengthBC063397small nuclear ribonucleoprotein polypeptide F
40123237Full LengthBC128452small nuclear ribonucleoprotein polypeptide F
40123239Full LengthBC128453small nuclear ribonucleoprotein polypeptide F

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003086  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003095 NP_003086 P62306 LSM

Related Sequences

 
mRNAGenPeptSwissProt
BC002505 AAH02505 P62306
BC063397 AAH63397 P62306
BC128452 AAI28453 P62306
BC128453 AAI28454 P62306
AK311752 BAG34695 P62306
X85372 CAA59688 P62306
CR456751 CAG33032 P62306

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRPF NP_003086 M.musculus Snrpf 69878 Gene Info NP_081522 100
R.norvegicus Snrpf 680737   NP_001119563 100
A.thaliana RUXF 829145   NP_194751 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta