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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC38A7, solute carrier family 38, member 7
Sequence ID:NM_018231
Entrez Gene ID:55238
Ensembl ID:ENSG00000103042

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 58700297 - 58718674

 Exon Info From UCSC:
NM_018231

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3510557Full LengthBC001961solute carrier family 38, member 7
5196768IncompleteBC063399amino acid transporter

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060701  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018231 NP_060701 Q9NVC3 Aa_trans

Related Sequences

 
mRNAGenPeptSwissProt
BC001961 AAH01961 Q9NVC3
AK001677 BAA91830 Q9NVC3
AK022786 BAB14244 Q9NVC3
AK222932 BAD96652 Q9NVC3
AK299424 BAG61404 B4DRU2
CR457236 CAG33517 Q9NVC3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC38A7 NP_060701 M.musculus Slc38a7 234595 Gene Info NP_766346 95
R.norvegicus Slc38a7 291840   NP_001003705 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)