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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CCL16, chemokine (C-C motif) ligand 16
Sequence ID:NM_004590
Entrez Gene ID:6360
Ensembl ID:ENSG00000161573

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 34303537 - 34308532

NM_004590 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
212333430353534304766
123413543430517834305298
135514973430838034308522

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40009719Full LengthBC099662chemokine (C-C motif) ligand 16
40009715IncompleteBC096352chemokine (C-C motif) ligand 16
40009721IncompleteBC099663chemokine (C-C motif) ligand 16
40009725IncompleteBC099664chemokine (C-C motif) ligand 16

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004581  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004590 NP_004581 O15467 IL8

Related Sequences

 
mRNAGenPeptSwissProt
U91746 AAC05587 O15467
AF055467 AAC28844 O15467
AF039955 AAC97451 O15467
BC099662 AAH99662 O15467
AB007454 BAA24057 O15467

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)