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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SHOC2, soc-2 suppressor of clear homolog (C. elegans)
Sequence ID:NM_001269039
NM_007373
RefSeqGene ID:NG_028922
Entrez Gene ID:8036
Ensembl ID:ENSG00000108061

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 112679372 - 112773422

Transcript StartTranscript EndChromosomal Start Chromosomal End
1115112679300112679414
1161052112723882112724818
10531190112745385112745522
11911321112760172112760302
13221510112764363112764551
15111633112767288112767410
16341771112769005112769142
17721889112769470112769587
18903946112771367112773423

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6067669Full LengthBC050445soc-2 suppressor of clear homolog (C. elegans)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031399  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001269039 NP_001255968    
NM_007373 NP_031399 Q9UQ13 LRR_1

Related Sequences

 
mRNAGenPeptSwissProt
AF054828 AAC25698 Q9UQ13
AF068920 AAC39856 Q9UQ13
BC050445 AAH50445 Q9UQ13
AB020669 BAA74885 Q9UQ13
AK292833 BAF85522 Q9UQ13
AK090820 BAG52235 Q9UQ13
AK293271 BAG56800 B4DDN9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SHOC2 NP_031399 M.musculus Shoc2 56392 Gene Info NP_001161977 98
R.norvegicus Shoc2 309548   NP_001013173 98
D.melanogaster Sur-8 42093   NP_732231 63
C.elegans soc-2 177286   NP_741391 58
A.gambiae AgaP_AGAP004485 1274632   XP_313783 56
A.thaliana GSO1 827760   NP_193747 34
A.thaliana GSO2 834499   NP_199283 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)