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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. UPF3B, UPF3 regulator of nonsense transcripts homolog B (yeast)
Sequence ID:NM_023010
NM_080632
RefSeqGene ID:NG_009241
Entrez Gene ID:65109
Ensembl ID:ENSG00000125351

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq25-q26Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 118967991 - 118986910

 Exon Info From UCSC:
NM_023010
NM_080632

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40117102Full LengthBC121017UPF3 regulator of nonsense transcripts homolog B (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_542199  NP_075386  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_023010 NP_075386   Smg4_UPF3
NM_080632 NP_542199 Q9BZI7 Smg4_UPF3

Related Sequences

 
mRNAGenPeptSwissProt
AY013251 AAG48511 Q9BZI7
AF318576 AAG60691 Q9BZI7
BC121017 AAI21018 Q9BZI7
BC121018 AAI21019 Q0VAK7
AK093728 BAG52755 B3KSJ3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens UPF3B NP_542199 M.musculus Upf3b 68134 Gene Info NP_080849 87
R.norvegicus Upf3b 313449   NP_001129345 87
D.melanogaster Upf3 37792   NP_726375 34
A.gambiae AgaP_AGAP006649 1277233   XP_316679 32
C.elegans smg-4 179371   NP_741600 31
A.thaliana UPF3 840295   NP_001117406 30
S.pombe SPAC13G7.03 2542908   NP_593705 25

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)