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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. COPE, coatomer protein complex, subunit epsilon
Sequence ID:NM_007263
NM_199442
NM_199444
Entrez Gene ID:11316
Ensembl ID:ENSG00000105669

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 19010322 - 19030197

 Exon Info From UCSC:
NM_007263
NM_199442
NM_199444

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2906127Full LengthBC003155coatomer protein complex, subunit epsilon
2989183Full LengthBC007250coatomer protein complex, subunit epsilon
4891380Full LengthBC017285coatomer protein complex, subunit epsilon

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_955476  NP_009194  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007263 NP_009194 O14579 Coatomer_E
NM_199442 NP_955474    
NM_199444 NP_955476   Coatomer_E

Related Sequences

 
mRNAGenPeptSwissProt
BC003155 AAH03155 O14579
BC007250 AAH07250 O14579
BC017285 AAH17285 O14579
AF092438 AAP97213 Q7Z4Z1
DQ893417 ABM84343  
DQ896735 ABM87734  
AK222584 BAD96304 Q53HJ6
AK315281 BAG37690 O14579
AJ131182 CAA10316 O14579
AJ249366 CAB55628 O14579
AL136928 CAB66862 O14579
CR456886 CAG33167 O14579
AM393761 CAL38636  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COPE NP_009194 R.norvegicus Cope 290659   NP_001099546 92
M.musculus Cope 59042 Gene Info NP_067513 91
A.gambiae AgaP_AGAP006625 1277211   XP_316655 44
A.thaliana AT2G34840 818049   NP_181030 43
A.thaliana AT1G30630 839943   NP_174351 43
D.melanogaster epsilonCOP 33908   NP_609037 40
C.elegans F45G2.4 176766   NP_499771 37
N.crassa NCU11274 3877805   XP_961614 34
S.pombe sec28 2540317   NP_595959 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)