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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LHX6, LIM homeobox 6
Sequence ID:NM_001242333
NM_001242334
NM_001242335
NM_014368
NM_199160
RefSeqGene ID:NG_029683
Entrez Gene ID:26468
Ensembl ID:ENSG00000106852

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q33.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 124966979 - 124989762

 Exon Info From UCSC:
NM_014368
NM_199160

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40008208Full LengthBC103936LIM homeobox 6
40008210Full LengthBC103937LIM homeobox 6
40008211Full LengthBC103938LIM homeobox 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055183  NP_954629  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001242333 NP_001229262    
NM_001242334 NP_001229263 Q9UPM6  
NM_001242335 NP_001229264    
NM_014368 NP_055183   Homeobox
LIM
NM_199160 NP_954629   Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
BC103936 AAI03937 Q9UPM6
BC103937 AAI03938 Q9UPM6
BC103938 AAI03939 Q3SY65
EU446700 ABZ92229  
AB031041 BAA83422 Q9UPM6
AB031042 BAA83423 Q9UPM6
AK289827 BAF82516 Q9UPM6
AK313808 BAG36544 Q9UPM6
AK297175 BAH12516 Q9UPM6
AK299709 BAH13108 Q9UPM6
AL136570 CAB66505 Q9UPM6
AM392697 CAL37575  
AM393362 CAL38240  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LHX6 NP_055183 M.musculus Lhx6 16874 Gene Info NP_032526 98
R.norvegicus Lhx6 311901   NP_001101307 98
A.gambiae AgaP_AGAP006537 4576611   XP_001237835 53
A.gambiae AgaP_AGAP006536 1277135   XP_316574 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)