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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CHRNA6, cholinergic receptor, nicotinic, alpha 6 (neuronal)
Sequence ID:NM_001199279
NM_004198
Entrez Gene ID:8973
Ensembl ID:ENSG00000147434

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8p11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 42608069 - 42623753

Transcript StartTranscript EndChromosomal Start Chromosomal End
206914260778142608452
69216704261098842611966
167117804261207042612179
178118254261421142614255
182619654262020742620346
196620904262349442623618

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4862198Full LengthBC014456cholinergic receptor, nicotinic, alpha 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004189  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001199279 NP_001186208    
NM_004198 NP_004189 Q15825 Neur_chan_LBD
Neur_chan_memb

Related Sequences

 
mRNAGenPeptSwissProt
U62435 AAB40113 Q15825
BC014456 AAH14456 Q15825
HQ448331 ADQ32811  
AK313521 BAG36301 Q15825
AK298798 BAG60933 Q15825
Y16282 CAA76155 Q15825

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHRNA6 NP_004189 M.musculus Chrna6 11440 Gene Info NP_067344 85
R.norvegicus Chrna6 81721   NP_476532 85
A.gambiae AgaP_AGAP000329 1271929   XP_310786 55
D.melanogaster nAcRalpha-7E 31767   NP_525079 55
C.elegans unc-63 172150   NP_491533 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)