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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. LSM2, LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Sequence ID:NM_021177
Entrez Gene ID:57819
Ensembl ID:ENSG00000204392

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 31765173 - 31774747

NM_021177 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3842537Full LengthBC009192LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067000  

Protein Infomation

NM_021177 NP_067000 Q9Y333 LSM

Related Sequences

AF182288 AAD56226 Q9Y333
AF196468 AAG33023 Q9Y333
AF136977 AAG49438 Q9Y333
BC009192 AAH09192 Q9Y333
DQ892903 ABM83829  
DQ896539 ABM87538  
AJ245416 CAB52190 Q9Y333
CR542146 CAG46943 Q9Y333
CR542157 CAG46954 Q9Y333

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens LSM2 NP_067000 M.musculus Lsm2 27756 Gene Info NP_001103571 100
A.gambiae AgaP_AGAP005136 1274814   XP_314020 98
D.melanogaster CG10418 39408   NP_648570 96
C.elegans gut-2 179833   NP_506348 84
A.thaliana AT1G03330 839526   NP_563682 76
P.falciparum PFE1020w 813019   XP_001351761 67
S.cerevisiae LSM2 852255   NP_009527 63
N.crassa NCU07382 3875013   XP_958875 63
S.pombe lsm2 2538804   NP_588459 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)