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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SIX2, SIX homeobox 2
Sequence ID:NM_016932
RefSeqGene ID:NG_009360
Entrez Gene ID:10736
Ensembl ID:ENSG00000170577

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 45232812 - 45236301

NM_016932 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2613254523232445233623
132621784523568945236541

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3027992Full LengthBC024033SIX homeobox 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058628  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016932 NP_058628 Q9NPC8
Q8TBA2
Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
AF136940 AAF69032 Q9NPC8
BC024033 AAH24033 Q8TBA2
AF332196 AAK16581 Q9NPC8
AF332197 AAK16582 Q9NPC8
BT020100 AAV38903 Q9NPC8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SIX2 NP_058628 R.norvegicus Six2 366542   XP_345631 99
M.musculus Six2 20472 Gene Info NP_035510 99
D.melanogaster so 35662   NP_476733 81
A.gambiae AgaP_AGAP011695 1280941   XP_320814 69
C.elegans ceh-33 191622   NP_504420 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)