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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPUSD1, RNA pseudouridylate synthase domain containing 1
Sequence ID:NM_058192
Entrez Gene ID:113000
Ensembl ID:ENSG00000007376

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 834981 - 837737

NM_058192 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
191421834974836376
14221523836826836927
15241626837076837178
16271750837353837476
17511939837555837743
19402067838255838382

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3937184Full LengthBC011783RNA pseudouridylate synthase domain containing 1
3853655IncompleteBC012951RNA pseudouridylate synthase domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_478072  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_058192 NP_478072 Q9UJJ7 PseudoU_synth_2

Related Sequences

 
mRNAGenPeptSwissProt
BC011783 AAH11783 Q9UJJ7
BC012951 AAH12951 Q96E34
DQ892918 ABM83844  
DQ896167 ABM87166  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPUSD1 NP_478072 M.musculus Rpusd1 106707 Gene Info NP_082285 84
R.norvegicus Rpusd1 287148   NP_001099244 84
A.gambiae AgaP_AGAP004401 1274545   XP_313685 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)