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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL12A1, Collagen, type XII, alpha 1
Sequence ID:NM_004370
NM_080645
Entrez Gene ID:1303
Ensembl ID:ENSG00000111799

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q12-q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 75794041 - 75812369

 Exon Info From UCSC:
NM_004370
NM_080645

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9056796Full LengthBC146868collagen, type XII, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004361  NP_542376  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004370 NP_004361 Q99715 fn3
VWA
Collagen
NM_080645 NP_542376   fn3
VWA
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
U68139 AAC01506 Q99715
U73778 AAC51244 Q99715
U73779 AAD40483 Q99715
Q5TF09
BC050587 AAH50587 Q86TG9
BC146868 AAI46869 B9EJB8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL12A1 NP_004361 M.musculus Col12a1 12816 Gene Info NP_031756 92
R.norvegicus Col12a1 25683   XP_243912 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)