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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC12A4, solute carrier family 12 (potassium/chloride transporters), member 4
Sequence ID:NM_001145961
NM_001145962
NM_001145963
NM_001145964
NM_005072
Entrez Gene ID:6560
Ensembl ID:ENSG00000124067

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 67978387 - 68002456

 Exon Info From UCSC:
NM_001145961
NM_001145962
NM_001145963
NM_001145964
NM_005072

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3349710Full LengthBC021193solute carrier family 12 (potassium/chloride transporters), member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005063  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001145961 NP_001139433    
NM_001145962 NP_001139434    
NM_001145963 NP_001139435    
NM_001145964 NP_001139436    
NM_005072 NP_005063 Q9UP95 AA_permease
KCl_Cotrans_1

Related Sequences

 
mRNAGenPeptSwissProt
AF047338 AAC32815 Q9UP95
AF053402 AAC35282 Q9UP95
AF054505 AAC39684 Q9UP95
AF054506 AAC39685 Q9UP95
U55054 AAC50563 Q9UP95
BC021193 AAH21193 Q9UP95
AY026038 AAK01946 Q9UP95
DQ892254 ABM83180  
DQ895457 ABM86383  
AK097808 BAG53532 B3KUS0
AK293906 BAG57291 B4DF30
AK293956 BAG57330 B4DF69
AK299042 BAG61116 B4DR04
AK302790 BAG63994 B4DZ82
AK316415 BAH14786 B7ZAV0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC12A4 NP_005063 M.musculus Slc12a4 20498 Gene Info NP_033221 96
R.norvegicus Slc12a4 29501   NP_062102 96
A.gambiae AgaP_AGAP011498 1278350   XP_317803 61
D.melanogaster kcc 37800   NP_726378 58
C.elegans kcc-2 177370   NP_500910 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)