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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
Sequence ID:NM_001042546
NM_001243728
NM_001256418
NM_022745
Entrez Gene ID:64756
Ensembl ID:ENSG00000123472

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p33-p32.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 47098410 - 47099919

 Exon Info From UCSC:
NM_001042546
NM_022745

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4281102Full LengthBC008498ATP synthase mitochondrial F1 complex assembly factor 1
4870683Full LengthBC018781ATP synthase mitochondrial F1 complex assembly factor 1
5213790Full LengthBC071731ATP synthase mitochondrial F1 complex assembly factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_073582  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001042546 NP_001036011    
NM_001243728 NP_001230657    
NM_001256418 NP_001243347    
NM_022745 NP_073582   ATP11

Related Sequences

 
mRNAGenPeptSwissProt
BC008498 AAH08498 Q5TC12
BC018781 AAH18781 Q5TC12
BC071731 AAH71731 Q5TC12
AF111705 AAM12421 Q8TE08
EU831580 ACE86499  
EU831493 ACE87180  
AK026004 BAB15316 Q5TC12
AK296360 BAH12330 B7Z3U4
AK301874 BAH13572 B7Z7D6
AK302090 BAH13622 B7Z7I6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATPAF1 NP_073582 M.musculus Atpaf1 230649 Gene Info NP_851383 91
R.norvegicus Atpaf1 313510   NP_001101429 89
A.gambiae AgaP_AGAP004641 1275874   XP_315167 37
D.melanogaster CG10340 42020   NP_650565 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)