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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CXCL13, chemokine (C-X-C motif) ligand 13
Sequence ID:NM_006419
Entrez Gene ID:10563
Ensembl ID:ENSG00000156234

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 78526985 - 78532231

NM_006419 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1367843290678432941
371427852697778527082
1432757852885678528988
2763567853176778531847
35712017853214178532985

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4246053Full LengthBC012589chemokine (C-X-C motif) ligand 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006410  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006419 NP_006410 Q53X90
O43927
IL8

Related Sequences

 
mRNAGenPeptSwissProt
AF044197 AAC14402 Q53X90
O43927
AF029894 AAC17980 Q53X90
O43927
BC012589 AAH12589 Q53X90
O43927
HQ448702 ADQ33180  
AJ002211 CAA05250 Q53X90
O43927
CR407624 CAG28552 Q53X90
O43927

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CXCL13 NP_006410 M.musculus Cxcl13 55985 Gene Info NP_061354 48
R.norvegicus Cxcl13 498335   NP_001017496 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)