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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. LIG3, Ligase III, DNA, ATP-dependent
Sequence ID:NM_013975
NM_002311
RefSeqGene ID:NG_029221
Entrez Gene ID:3980
Ensembl ID:ENSG00000005156

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q11.2-q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 33330336 - 33332661

 Exon Info From UCSC:
NM_013975
NM_002311

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6092747Full LengthBC068005ligase III, DNA, ATP-dependent

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_039269  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_002311 NP_002302      
NM_013975 NP_039269 P49916 EC 6.5.1.1 zf-PARP
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U40671 AAA85022 P49916 EC 6.5.1.1
BC009026 AAH09026 Q96DF0  
BC068005 AAH68005 P49916 EC 6.5.1.1
AK300363 BAH13269 B7Z6I3  
X84740 CAA59230 P49916 EC 6.5.1.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LIG3 NP_039269 R.norvegicus Lig3 303369   NP_001012011 90
M.musculus Lig3 16882 Gene Info NP_034846 88
D.melanogaster lig3 41518   NP_650187 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)