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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNRPC, Small nuclear ribonucleoprotein polypeptide C
Sequence ID:NM_003093
Entrez Gene ID:6631
Ensembl ID:ENSG00000124562

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 34725296 - 34741569

NM_003093 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14583472487034725327
4595013472568834725730
5026103473037134730479
6117003473568434735773
7018053473806734738171
80612163474122234741632

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40119776Full LengthBC121082small nuclear ribonucleoprotein polypeptide C
40119777Full LengthBC121083small nuclear ribonucleoprotein polypeptide C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003084  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003093 NP_003084 P09234
Q5TAL4
zf-U1

Related Sequences

 
mRNAGenPeptSwissProt
M18465 AAA36618 P09234
BC121082 AAI21083 P09234
Q5TAL4
BC121083 AAI21084 Q5TAL4
AK223098 BAD96818 Q53G33
AK311955 BAG34895 Q5TAL4
X12517 CAA31037 P09234
Q5TAL4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRPC NP_003084 M.musculus Snrpc 20630 Gene Info NP_035562 99
R.norvegicus Snrpc 361808   XP_342102 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta