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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SNRPA1, Small nuclear ribonucleoprotein polypeptide A'
Sequence ID:NM_003090
Entrez Gene ID:6627
Ensembl ID:ENSG00000131876

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15q26.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 101821913 - 101835388

NM_003090 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12282101821716101821986
283376101825171101825264
377452101825930101826005
453532101826418101826497
533635101827112101827214
636682101827860101827906
683761101832166101832244
762909101833229101833376
9101068101835301101835459

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4514975Full LengthBC071717small nuclear ribonucleoprotein polypeptide A'
4904205Full LengthBC022816small nuclear ribonucleoprotein polypeptide A'
30330402Full LengthBC067846small nuclear ribonucleoprotein polypeptide A'

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003090 NP_003081 P09661  

Related Sequences

 
mRNAGenPeptSwissProt
BC022816 AAH22816 P09661
BC067846 AAH67846 Q6NVW9
BC071717 AAH71717 P09661
DQ892838 ABM83764  
DQ896084 ABM87083  
AK223070 BAD96790 Q53G61
AK223110 BAD96830 Q53G21
AK290078 BAF82767 Q6NVW9
AK312200 BAG35133 P09661
AJ130971 CAA10271 O95485
AJ130972 CAA10272 Q9UEN1
X13482 CAA31838 P09661

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRPA1 NP_003081 M.musculus Snrpa1 68981 Gene Info NP_067311 98
R.norvegicus LOC100361269 100361269   XP_002728810 98
A.gambiae AgaP_AGAP007670 1269557   XP_001687866 58
D.melanogaster U2A 35713   NP_610315 56
A.thaliana U2A' 837505   NP_172447 51
C.elegans sap-1 173767   NP_494763 49
S.pombe SPBC1861.08c 2539730   NP_596725 44
N.crassa NCU06622 3878512   XP_962364 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta