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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNRPA, Small nuclear ribonucleoprotein polypeptide A
Sequence ID:NM_004596
Entrez Gene ID:6626
Ensembl ID:ENSG00000077312

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 41257125 - 41271243

NM_004596 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16284125675841257385
6298014126323641263408
8029814126533541265514
98211554126880541268978
115612444126949141269579
124516284127091241271295

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822987Full LengthBC000405small nuclear ribonucleoprotein polypeptide A
3677365Full LengthBC008290small nuclear ribonucleoprotein polypeptide A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004587  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004596 NP_004587 P09012 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC000405 AAH00405 P09012
BC008290 AAH08290 P09012
AK313182 BAG35999 B2R802
AK293140 BAG56688 B4DDC7
X06347 CAA29653 P09012

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRPA NP_004587 R.norvegicus Snrpa 292729   NP_001008304 99
M.musculus Snrpa 53607 Gene Info NP_001040102 96
A.gambiae AgaP_AGAP011637 1280995   XP_320869 70
D.melanogaster snf 31442   NP_511045 70
C.elegans rnp-2 177181   NP_500504 56
A.thaliana U1A 819371   NP_182280 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta