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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNRNP70, Small nuclear ribonucleoprotein 70kDa (U1)
Sequence ID:NM_003089
Entrez Gene ID:6625
Ensembl ID:ENSG00000104852

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 49607355 - 49611863

NM_003089 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14294958846449588892
4305864958966149589817
5876494959354749593609
6507044959372249593776
7057694960168349601747
7708324960189849601960
8339144960464649604727
91510164960789049607991
101711044961088149610968
110519224961105149611868

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3454479Full LengthBC001315small nuclear ribonucleoprotein 70kDa (U1)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003080  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003089 NP_003080 P08621 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
M22636 AAA03001 P08621
BC000342 AAH00342 Q9UFS1
BC001315 AAH01315 P08621
AK293120 BAF85809 A8KAQ5
AK056808 BAG51812 B3KPV0
AK096783 BAG53365 P08621
X06811 CAA29960 P08621
X06812 CAA29961 P08621
X06813 CAA29962 Q15685
X06814 CAA29963 P08621
X06815 CAA29964 P08621
X06816 CAA29965 P08621
X06817 CAA29966 P08621
X06818 CAA29967 Q15688
X07401 CAA30303 P08621
X07402 CAA30304 P08621
X07403 CAA30305 P08621
X84841 CAA59278 P08621
AL117399 CAB55900 Q9UFS1
AL117507 CAB55969 P08621

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRNP70 NP_003080 R.norvegicus Snrnp70 361574   NP_001101953 100
M.musculus Snrnp70 20637 Gene Info NP_033250 98
A.gambiae AgaP_AGAP006755 1270305   XP_565448 65
D.melanogaster snRNP-U1-70K 33982   NP_477205 62
C.elegans rnp-7 176002   NP_498565 50
A.thaliana U1-70K 824230   NP_190636 48
P.falciparum MAL13P1.338 813905   XP_001350382 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta