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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SRSF2, Serine/arginine-rich splicing factor 2
Sequence ID:NM_003016
NM_001195427
RefSeqGene ID:NG_032905
Entrez Gene ID:6427
Ensembl ID:ENSG00000161547

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 74730210 - 74733413

Transcript StartTranscript EndChromosomal Start Chromosomal End
4323907473019874732545
239129227473288074733411

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822956Full LengthBC000339splicing factor, arginine/serine-rich 2
3452024Full LengthBC001303splicing factor, arginine/serine-rich 2
4837392Full LengthBC066958splicing factor, arginine/serine-rich 2
5296371Full LengthBC070086splicing factor, arginine/serine-rich 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003007  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001195427 NP_001182356    
NM_003016 NP_003007 Q01130 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
M90104 AAA60306 Q01130
BC000339 AAH00339 Q01130
BC001303 AAH01303 Q01130
BC066958 AAH66958 Q6NXQ0
BC070086 AAH70086 Q01130
BT007250 AAP35914 Q01130
DQ891210 ABM82136  
DQ894393 ABM85319  
AK092489 BAC03903 Q8NAK9
AK093626 BAC04206 Q8N220
AK223252 BAD96972 Q53FN0
AK097069 BAG53419 B3KUF7
AK098209 BAG53593 B3KUY1
AK123712 BAG53944 B3KVY2
AK124792 BAG54097 Q01130
AK126432 BAG54327 B3KX15
X62447 CAA44307 Q01130

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SRSF2 NP_001182356 M.musculus Srsf2 20382 Gene Info NP_035488 100
R.norvegicus Srsf2 494445   NP_001009720 100

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta