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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RBBP4, Retinoblastoma binding protein 4
Sequence ID:NM_005610
NM_001135255
NM_001135256
Entrez Gene ID:5928
Ensembl ID:ENSG00000162521

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 33142616 - 33143073

 Exon Info From UCSC:
NM_005610
NM_001135255
NM_001135256

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3356558Full LengthBC003092retinoblastoma binding protein 4
6338602Full LengthBC075836retinoblastoma binding protein 4
6526200Full LengthBC053904retinoblastoma binding protein 4
3686783IncompleteBC015123retinoblastoma binding protein 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005601  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001135255 NP_001128727    
NM_001135256 NP_001128728    
NM_001161708 NP_001155180    
NM_005610 NP_005601 Q09028 WD40
NM_030786 NP_110413 Q9H7C4  

Related Sequences

 
mRNAGenPeptSwissProt
BC003092 AAH03092 Q09028
BC015123 AAH15123 Q09028
BC053904 AAH53904 Q09028
BC075836 AAH75836 Q09028
BC119700 AAI19701 Q9H7C4
BC119701 AAI19702 Q9H7C4
BT007309 AAP35973 Q09028
DQ892499 ABM83425  
DQ895712 ABM86638  
AK024707 BAB14970 Q9H7C4
AK222779 BAD96499 Q09028
AK312571 BAG35466 Q09028
AK297958 BAG60270 Q9H7C4
AK299251 BAG61282 Q09028
AK299410 BAG61392 B4DRT0
AK302275 BAG63620 Q9H7C4
X71810 CAA50685 Q09028
X74262 CAA52321 Q09028

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RBBP4 NP_005601 M.musculus Rbbp4 19646 Gene Info NP_033056 100
R.norvegicus Rbbp4 313048   NP_001101382 100
A.gambiae AgaP_AGAP003228 1273902   XP_312936 93
D.melanogaster Caf1 41836   NP_001163617 91
C.elegans lin-53 172802   NP_492552 73
S.pombe mis16 2539214   NP_587881 55
N.crassa NCU06679 3877141   XP_960994 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta