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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
Aberration type:




Expand Topography List:

Expand Morphology List:

Expand Gene List:




[Full Text]

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
11p11 del(11)(p11) Squamous cell carcinoma Oral cavity  
11p13 add(11)(p13) Squamous cell carcinoma Oral cavity  
11p13 del(11)(p13) Squamous cell carcinoma Oral cavity  
11p15 add(11)(p15) Squamous cell carcinoma Oral cavity  
11q10 i(11)(q10) Squamous cell carcinoma Oral cavity  
11q13 add(11)(q13) Squamous cell carcinoma Oral cavity  
11q13 del(11)(q13) Squamous cell carcinoma Oral cavity  
11q13 der(11)add(11)(q13)hsr(11)(q13) Squamous cell carcinoma Oral cavity  
11q13 der(11)add(11)(q13)hsr(11)(q13) Squamous cell carcinoma Oral cavity  
11q21 add(11)(q21) Squamous cell carcinoma Oral cavity  
11q23 add(11)(q23) Squamous cell carcinoma Oral cavity  

Numerical Chromosomal Trisomy Abnormalities

Abnormality Morphology Topography Cases Genes
+1 Squamous cell carcinoma Oral cavity  
+2 Squamous cell carcinoma Oral cavity  
+3 Squamous cell carcinoma Oral cavity  
+5 Squamous cell carcinoma Oral cavity  
+6 Squamous cell carcinoma Oral cavity  
+7 Squamous cell carcinoma Oral cavity 17   
+8 Squamous cell carcinoma Oral cavity 17   
+9 Squamous cell carcinoma Oral cavity 11   
+10 Squamous cell carcinoma Oral cavity  
+11 Squamous cell carcinoma Oral cavity  
+12 Squamous cell carcinoma Oral cavity  
+13 Squamous cell carcinoma Oral cavity  
+14 Squamous cell carcinoma Oral cavity  
+15 Squamous cell carcinoma Oral cavity  
+16 Squamous cell carcinoma Oral cavity  
+17 Squamous cell carcinoma Oral cavity 12   
+18 Squamous cell carcinoma Oral cavity  
+19 Squamous cell carcinoma Oral cavity  
+20 Squamous cell carcinoma Oral cavity 21   
+22 Squamous cell carcinoma Oral cavity 17   
+X Squamous cell carcinoma Oral cavity  
+Y Squamous cell carcinoma Oral cavity  

Numerical Chromosomal Monosomy Abnormalities

Abnormality Morphology Topography Cases Genes
-1 Squamous cell carcinoma Oral cavity  
-2 Squamous cell carcinoma Oral cavity 18   
-3 Squamous cell carcinoma Oral cavity 19   
-4 Squamous cell carcinoma Oral cavity 24   
-5 Squamous cell carcinoma Oral cavity 10   
-6 Squamous cell carcinoma Oral cavity 14   
-7 Squamous cell carcinoma Oral cavity  
-8 Squamous cell carcinoma Oral cavity 15   
-9 Squamous cell carcinoma Oral cavity 24   
-10 Squamous cell carcinoma Oral cavity 27   
-11 Squamous cell carcinoma Oral cavity 10   
-12 Squamous cell carcinoma Oral cavity 14   
-13 Squamous cell carcinoma Oral cavity 32   
-14 Squamous cell carcinoma Oral cavity 18   
-15 Squamous cell carcinoma Oral cavity 18   
-16 Squamous cell carcinoma Oral cavity 18   
-17 Squamous cell carcinoma Oral cavity 16   
-18 Squamous cell carcinoma Oral cavity 34   
-19 Squamous cell carcinoma Oral cavity 30   
-20 Squamous cell carcinoma Oral cavity 12   
-21 Squamous cell carcinoma Oral cavity 33   
-22 Squamous cell carcinoma Oral cavity 31   
-X Squamous cell carcinoma Oral cavity 17   
-Y Squamous cell carcinoma Oral cavity 57