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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
Aberration type:




Expand Topography List:

Expand Morphology List:

Expand Gene List:




[Full Text]

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p11 add(1)(p11) Chordoma Skeleton  
1p36 add(1)(p36) Chordoma Skeleton  
1q10 i(1)(q10) Chordoma Skeleton  
5p13 del(5)(p13) Chordoma Skeleton  
7p13 del(7)(p13p15) Chordoma Skeleton  
7p15 del(7)(p13p15) Chordoma Skeleton  
9p24 add(9)(p24) Chordoma Skeleton  
11p15 add(11)(p15) Chordoma Skeleton  
11q25 add(11)(q25) Chordoma Skeleton  
13q34 add(13)(q34) Chordoma Skeleton  
14q32 del(14)(q32) Chordoma Skeleton  
19q13 add(19)(q13) Chordoma Skeleton  
21q22 add(21)(q22) Chordoma Skeleton  
22q11 del(22)(q11) Chordoma Skeleton  
Xp22 del(X)(p22) Chordoma Skeleton  

Numerical Chromosomal Trisomy Abnormalities

Abnormality Morphology Topography Cases Genes
+1 Chordoma Skeleton  
+2 Chordoma Skeleton  
+5 Chordoma Skeleton  
+6 Chordoma Skeleton  
+7 Chordoma Skeleton  
+8 Chordoma Skeleton  
+12 Chordoma Skeleton  
+19 Chordoma Skeleton  
+20 Chordoma Skeleton  
+21 Chordoma Skeleton  
+22 Chordoma Skeleton  

Numerical Chromosomal Monosomy Abnormalities

Abnormality Morphology Topography Cases Genes
-1 Chordoma Skeleton  
-2 Chordoma Skeleton  
-3 Chordoma Skeleton 20   
-4 Chordoma Skeleton 15   
-5 Chordoma Skeleton  
-6 Chordoma Skeleton  
-8 Chordoma Skeleton  
-9 Chordoma Skeleton  
-10 Chordoma Skeleton 14   
-11 Chordoma Skeleton  
-12 Chordoma Skeleton  
-13 Chordoma Skeleton 14   
-14 Chordoma Skeleton 11   
-15 Chordoma Skeleton  
-16 Chordoma Skeleton  
-17 Chordoma Skeleton  
-18 Chordoma Skeleton 13   
-19 Chordoma Skeleton  
-20 Chordoma Skeleton  
-21 Chordoma Skeleton  
-22 Chordoma Skeleton 11   
-X Chordoma Skeleton  
-Y Chordoma Skeleton 10