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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
Aberration type:




Expand Topography List:

Expand Morphology List:

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[Full Text]

Balanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p32 t(1;12)(p32;q14) Lipoma Soft tissue 12  HMGA2/PPAP2B,HMGA2+
1p32 t(1;12)(p32;q15) Lipoma Soft tissue  
1p32 t(1;6)(p32;p21) Lipoma Soft tissue HMGA1+
1p33 t(1;12)(p33;q14) Lipoma Soft tissue  
1p33 t(1;12)(p33;q15) Lipoma Soft tissue  
1p34 t(1;12)(p34;q15) Lipoma Soft tissue  
1p36 t(1;6)(p36;q25) Lipoma Soft tissue  
2q35 t(2;12)(q35;q15) Lipoma Soft tissue  
2q36 t(2;12)(q36;q14) Lipoma Soft tissue  
2q37 t(2;12)(q37;q13) Lipoma Soft tissue  
3q27 t(3;12)(q27;q13) Lipoma Soft tissue  
3q27 t(3;12)(q27;q14) Lipoma Soft tissue 10   
3q27 t(3;12)(q27;q15) Lipoma Soft tissue 10   
3q28 t(3;12)(q28;q14) Lipoma Soft tissue 11  HMGA2/LPP,HMGA2+
3q28 t(3;12)(q28;q15) Lipoma Soft tissue  
3q29 t(3;12)(q29;q14) Lipoma Soft tissue  
4q27 t(4;12)(q27;q15) Lipoma Soft tissue  
5q33 t(5;12)(q33;q13) Lipoma Soft tissue  
5q33 t(5;12)(q33;q14) Lipoma Soft tissue EBF1/RPSAP52,HMGA2/EBF1,HMGA2+
5q33 t(5;12)(q33;q15) Lipoma Soft tissue  
6p21 inv(6)(p21q21) Lipoma Soft tissue  
6p21 t(1;6)(p32;p21) Lipoma Soft tissue HMGA1+
6q21 inv(6)(p21q21) Lipoma Soft tissue  
6q25 t(1;6)(p36;q25) Lipoma Soft tissue  
9p22 t(9;12)(p22;q14) Lipoma Soft tissue HMGA2/NFIB,HMGA2+
9p22 t(9;12)(p22;q15) Lipoma Soft tissue  
10q22 t(10;12)(q22;q15) Lipoma Soft tissue HMGA2+
11q13 t(11;12)(q13;q14) Lipoma Soft tissue  
12p11 inv(12)(p11q15) Lipoma Soft tissue  
12p12 inv(12)(p12q14) Lipoma Soft tissue  
12q13 t(2;12)(q37;q13) Lipoma Soft tissue  
12q13 t(3;12)(q27;q13) Lipoma Soft tissue  
12q13 t(5;12)(q33;q13) Lipoma Soft tissue  
12q14 inv(12)(p12q14) Lipoma Soft tissue  
12q14 inv(12)(q14q24) Lipoma Soft tissue HMGA2+
12q14 t(11;12)(q13;q14) Lipoma Soft tissue  
12q14 t(1;12)(p32;q14) Lipoma Soft tissue 12  HMGA2/PPAP2B,HMGA2+
12q14 t(1;12)(p33;q14) Lipoma Soft tissue  
12q14 t(2;12)(q36;q14) Lipoma Soft tissue  
12q14 t(3;12)(q27;q14) Lipoma Soft tissue 10   
12q14 t(3;12)(q28;q14) Lipoma Soft tissue 11  HMGA2/LPP,HMGA2+
12q14 t(3;12)(q29;q14) Lipoma Soft tissue  
12q14 t(5;12)(q33;q14) Lipoma Soft tissue EBF1/RPSAP52,HMGA2/EBF1,HMGA2+
12q14 t(9;12)(p22;q14) Lipoma Soft tissue HMGA2/NFIB,HMGA2+
12q15 inv(12)(p11q15) Lipoma Soft tissue  
12q15 inv(12)(q15q24) Lipoma Soft tissue  
12q15 t(10;12)(q22;q15) Lipoma Soft tissue HMGA2+
12q15 t(1;12)(p32;q15) Lipoma Soft tissue  
12q15 t(1;12)(p33;q15) Lipoma Soft tissue  
12q15 t(1;12)(p34;q15) Lipoma Soft tissue  
12q15 t(2;12)(q35;q15) Lipoma Soft tissue  
12q15 t(3;12)(q27;q15) Lipoma Soft tissue 10   
12q15 t(3;12)(q28;q15) Lipoma Soft tissue  
12q15 t(4;12)(q27;q15) Lipoma Soft tissue  
12q15 t(5;12)(q33;q15) Lipoma Soft tissue  
12q15 t(9;12)(p22;q15) Lipoma Soft tissue  
12q24 inv(12)(q14q24) Lipoma Soft tissue HMGA2+
12q24 inv(12)(q15q24) Lipoma Soft tissue  

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p32 del(1)(p32) Lipoma Soft tissue  
4q21 add(4)(q21) Lipoma Soft tissue  
6p10 i(6)(p10) Lipoma Soft tissue  
6q24 del(6)(q24) Lipoma Soft tissue  
10p12 del(10)(p12) Lipoma Soft tissue  
11p11 add(11)(p11) Lipoma Soft tissue  
12q13 del(12)(q13) Lipoma Soft tissue  
12q14 add(12)(q14) Lipoma Soft tissue  
12q14 del(12)(q14q14) Lipoma Soft tissue HMGA2+
12q14 del(12)(q14q14) Lipoma Soft tissue HMGA2+
12q15 add(12)(q15) Lipoma Soft tissue  
12q24 add(12)(q24) Lipoma Soft tissue  
13q12 add(13)(q12) Lipoma Soft tissue  
13q12 del(13)(q12q22) Lipoma Soft tissue  
13q13 del(13)(q13q31) Lipoma Soft tissue  
13q14 del(13)(q14) Lipoma Soft tissue  
13q14 del(13)(q14q14) Lipoma Soft tissue  
13q14 del(13)(q14q14) Lipoma Soft tissue  
13q14 del(13)(q14q22) Lipoma Soft tissue  
13q22 del(13)(q12q22) Lipoma Soft tissue  
13q22 del(13)(q14q22) Lipoma Soft tissue  
13q22 del(13)(q22) Lipoma Soft tissue  
13q31 del(13)(q13q31) Lipoma Soft tissue  
17p13 add(17)(p13) Lipoma Soft tissue  
21q22 add(21)(q22) Lipoma Soft tissue  

Numerical Chromosomal Trisomy Abnormalities

Abnormality Morphology Topography Cases Genes
+5 Lipoma Soft tissue  
+7 Lipoma Soft tissue  
+8 Lipoma Soft tissue  
+9 Lipoma Soft tissue  
+12 Lipoma Soft tissue  
+19 Lipoma Soft tissue  

Numerical Chromosomal Monosomy Abnormalities

Abnormality Morphology Topography Cases Genes
-1 Lipoma Soft tissue  
-2 Lipoma Soft tissue  
-4 Lipoma Soft tissue  
-5 Lipoma Soft tissue  
-6 Lipoma Soft tissue  
-8 Lipoma Soft tissue  
-9 Lipoma Soft tissue  
-10 Lipoma Soft tissue  
-11 Lipoma Soft tissue  
-12 Lipoma Soft tissue  
-13 Lipoma Soft tissue 12   
-14 Lipoma Soft tissue  
-15 Lipoma Soft tissue  
-17 Lipoma Soft tissue  
-20 Lipoma Soft tissue  
-22 Lipoma Soft tissue  
-Y Lipoma Soft tissue