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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
Aberration type:




Expand Topography List:

Expand Morphology List:

Expand Gene List:




[Full Text]

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p11 add(1)(p11) Combined germ cell tumors Testis  
1p13 add(1)(p13) Combined germ cell tumors Testis  
1p13 del(1)(p13) Combined germ cell tumors Testis  
1p21 del(1)(p21) Combined germ cell tumors Testis  
1p36 add(1)(p36) Combined germ cell tumors Testis  
1q10 i(1)(q10) Combined germ cell tumors Testis  
1q11 add(1)(q11) Combined germ cell tumors Testis  
1q21 add(1)(q21) Combined germ cell tumors Testis  
1q32 add(1)(q32) Combined germ cell tumors Testis  
3p13 add(3)(p13) Combined germ cell tumors Testis  
3p21 del(3)(p21) Combined germ cell tumors Testis  
4p15 add(4)(p15) Combined germ cell tumors Testis  
5p15 add(5)(p15) Combined germ cell tumors Testis  
5q13 del(5)(q13) Combined germ cell tumors Testis  
5q35 add(5)(q35) Combined germ cell tumors Testis  
6q13 add(6)(q13) Combined germ cell tumors Testis  
6q13 del(6)(q13) Combined germ cell tumors Testis  
6q16 add(6)(q16) Combined germ cell tumors Testis  
7q11 add(7)(q11) Combined germ cell tumors Testis  
7q21 add(7)(q21) Combined germ cell tumors Testis  
7q22 del(7)(q22) Combined germ cell tumors Testis  
7q31 del(7)(q31) Combined germ cell tumors Testis  
8p23 der(8)t(8;9)(p23;q12) Combined germ cell tumors Testis  
8q10 i(8)(q10) Combined germ cell tumors Testis  
8q24 add(8)(q24) Combined germ cell tumors Testis  
9q12 der(8)t(8;9)(p23;q12) Combined germ cell tumors Testis  
10p13 del(10)(p13) Combined germ cell tumors Testis  
11q23 del(11)(q23) Combined germ cell tumors Testis  
11q25 add(11)(q25) Combined germ cell tumors Testis  
12p10 i(12)(p10) Combined germ cell tumors Testis 43   
12p11 add(12)(p11) Combined germ cell tumors Testis  
12p12 add(12)(p12) Combined germ cell tumors Testis  
12p13 add(12)(p13) Combined germ cell tumors Testis  
12q11 add(12)(q11) Combined germ cell tumors Testis  
12q15 del(12)(q15) Combined germ cell tumors Testis  
12q24 add(12)(q24) Combined germ cell tumors Testis  
13p11 add(13)(p11) Combined germ cell tumors Testis  
15p11 add(15)(p11) Combined germ cell tumors Testis  
16q22 add(16)(q22) Combined germ cell tumors Testis  
17q10 i(17)(q10) Combined germ cell tumors Testis  
18p11 add(18)(p11) Combined germ cell tumors Testis  
19p13 add(19)(p13) Combined germ cell tumors Testis  
19q13 add(19)(q13) Combined germ cell tumors Testis  
20p13 add(20)(p13) Combined germ cell tumors Testis  
20q13 add(20)(q13) Combined germ cell tumors Testis  
22q10 i(22)(q10) Combined germ cell tumors Testis  
Xp11 add(X)(p11) Combined germ cell tumors Testis  

Numerical Chromosomal Trisomy Abnormalities

Abnormality Morphology Topography Cases Genes
+1 Combined germ cell tumors Testis  
+2 Combined germ cell tumors Testis  
+3 Combined germ cell tumors Testis 13   
+4 Combined germ cell tumors Testis  
+5 Combined germ cell tumors Testis  
+6 Combined germ cell tumors Testis  
+7 Combined germ cell tumors Testis 20   
+8 Combined germ cell tumors Testis 26   
+9 Combined germ cell tumors Testis  
+10 Combined germ cell tumors Testis  
+12 Combined germ cell tumors Testis 20   
+13 Combined germ cell tumors Testis  
+14 Combined germ cell tumors Testis  
+15 Combined germ cell tumors Testis  
+16 Combined germ cell tumors Testis 11   
+17 Combined germ cell tumors Testis 14   
+18 Combined germ cell tumors Testis  
+20 Combined germ cell tumors Testis 12   
+21 Combined germ cell tumors Testis 20   
+22 Combined germ cell tumors Testis  
+X Combined germ cell tumors Testis 15   
+Y Combined germ cell tumors Testis 18   

Numerical Chromosomal Monosomy Abnormalities

Abnormality Morphology Topography Cases Genes
-1 Combined germ cell tumors Testis  
-2 Combined germ cell tumors Testis 10   
-3 Combined germ cell tumors Testis  
-4 Combined germ cell tumors Testis 37   
-5 Combined germ cell tumors Testis 30   
-6 Combined germ cell tumors Testis 22   
-7 Combined germ cell tumors Testis  
-8 Combined germ cell tumors Testis 12   
-9 Combined germ cell tumors Testis 33   
-10 Combined germ cell tumors Testis 35   
-11 Combined germ cell tumors Testis 38   
-12 Combined germ cell tumors Testis  
-13 Combined germ cell tumors Testis 42   
-14 Combined germ cell tumors Testis 23   
-15 Combined germ cell tumors Testis 28   
-16 Combined germ cell tumors Testis 24   
-17 Combined germ cell tumors Testis 11   
-18 Combined germ cell tumors Testis 40   
-19 Combined germ cell tumors Testis 23   
-20 Combined germ cell tumors Testis 22   
-21 Combined germ cell tumors Testis 15   
-22 Combined germ cell tumors Testis 31   
-X Combined germ cell tumors Testis  
-Y Combined germ cell tumors Testis 10