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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
Aberration type:




Expand Topography List:

Expand Morphology List:

Expand Gene List:




[Full Text]

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p31 add(1)(p31) Squamous cell carcinoma Vagina  
3p11 add(3)(p11) Squamous cell carcinoma Vagina  
3q10 i(3)(q10) Squamous cell carcinoma Vagina  
4q13 der(11)t(4;11)(q13;q22) Squamous cell carcinoma Vagina  
5p10 i(5)(p10) Squamous cell carcinoma Vagina  
5q12 del(5)(q12q33) Squamous cell carcinoma Vagina  
5q33 del(5)(q12q33) Squamous cell carcinoma Vagina  
8q10 i(8)(q10) Squamous cell carcinoma Vagina 17   
9q10 i(9)(q10) Squamous cell carcinoma Vagina  
9q34 add(9)(q34) Squamous cell carcinoma Vagina  
11q22 der(11)t(4;11)(q13;q22) Squamous cell carcinoma Vagina  
11q23 del(11)(q23) Squamous cell carcinoma Vagina  
14p11 add(14)(p11) Squamous cell carcinoma Vagina  
19p13 add(19)(p13) Squamous cell carcinoma Vagina  
19q13 add(19)(q13) Squamous cell carcinoma Vagina  
Xq10 i(X)(q10) Squamous cell carcinoma Vagina  

Numerical Chromosomal Trisomy Abnormalities

Abnormality Morphology Topography Cases Genes
+5 Squamous cell carcinoma Vagina  
+6 Squamous cell carcinoma Vagina  
+7 Squamous cell carcinoma Vagina 12   
+8 Squamous cell carcinoma Vagina  
+9 Squamous cell carcinoma Vagina  
+11 Squamous cell carcinoma Vagina  
+12 Squamous cell carcinoma Vagina  
+13 Squamous cell carcinoma Vagina  
+16 Squamous cell carcinoma Vagina  
+17 Squamous cell carcinoma Vagina  
+18 Squamous cell carcinoma Vagina  
+19 Squamous cell carcinoma Vagina  
+20 Squamous cell carcinoma Vagina  
+21 Squamous cell carcinoma Vagina  
+22 Squamous cell carcinoma Vagina  
+X Squamous cell carcinoma Vagina  

Numerical Chromosomal Monosomy Abnormalities

Abnormality Morphology Topography Cases Genes
-2 Squamous cell carcinoma Vagina  
-3 Squamous cell carcinoma Vagina  
-4 Squamous cell carcinoma Vagina  
-5 Squamous cell carcinoma Vagina  
-7 Squamous cell carcinoma Vagina  
-8 Squamous cell carcinoma Vagina  
-9 Squamous cell carcinoma Vagina  
-10 Squamous cell carcinoma Vagina  
-11 Squamous cell carcinoma Vagina  
-12 Squamous cell carcinoma Vagina  
-13 Squamous cell carcinoma Vagina  
-14 Squamous cell carcinoma Vagina  
-15 Squamous cell carcinoma Vagina  
-16 Squamous cell carcinoma Vagina  
-17 Squamous cell carcinoma Vagina  
-18 Squamous cell carcinoma Vagina  
-19 Squamous cell carcinoma Vagina  
-20 Squamous cell carcinoma Vagina  
-21 Squamous cell carcinoma Vagina  
-22 Squamous cell carcinoma Vagina  
-X Squamous cell carcinoma Vagina 12