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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
Aberration type:




Expand Topography List:

Expand Morphology List:

Expand Gene List:




[Full Text]

Balanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
9p11 inv(9)(p11q13) Squamous cell carcinoma Lung  
9q13 inv(9)(p11q13) Squamous cell carcinoma Lung  

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p10 der(1;7)(p10;q10) Squamous cell carcinoma Lung  
1p11 add(1)(p11) Squamous cell carcinoma Lung  
1p12 del(1)(p12) Squamous cell carcinoma Lung  
1p13 add(1)(p13) Squamous cell carcinoma Lung  
1p13 del(1)(p13) Squamous cell carcinoma Lung  
1p22 add(1)(p22) Squamous cell carcinoma Lung  
1p22 del(1)(p22) Squamous cell carcinoma Lung  
1p31 del(1)(p31) Squamous cell carcinoma Lung  
1p34 del(1)(p34) Squamous cell carcinoma Lung  
1q11 add(1)(q11) Squamous cell carcinoma Lung  
1q11 del(1)(q11) Squamous cell carcinoma Lung  
1q12 del(1)(q12) Squamous cell carcinoma Lung  
1q22 del(1)(q22) Squamous cell carcinoma Lung  
2p10 i(2)(p10) Squamous cell carcinoma Lung  
2p21 add(2)(p21) Squamous cell carcinoma Lung  
3p10 i(3)(p10) Squamous cell carcinoma Lung  
3p11 add(3)(p11) Squamous cell carcinoma Lung  
3p12 add(3)(p12) Squamous cell carcinoma Lung  
3p13 add(3)(p13) Squamous cell carcinoma Lung  
3p13 del(3)(p13) Squamous cell carcinoma Lung 12   
3p14 del(3)(p14) Squamous cell carcinoma Lung  
3p14 del(3)(p14p23) Squamous cell carcinoma Lung  
3p21 add(3)(p21) Squamous cell carcinoma Lung  
3p21 del(3)(p21) Squamous cell carcinoma Lung  
3p23 del(3)(p14p23) Squamous cell carcinoma Lung  
3p25 add(3)(p25) Squamous cell carcinoma Lung  
3q10 i(3)(q10) Squamous cell carcinoma Lung  
3q11 add(3)(q11) Squamous cell carcinoma Lung  
3q11 del(3)(q11) Squamous cell carcinoma Lung  
4p12 add(4)(p12) Squamous cell carcinoma Lung  
5p10 i(5)(p10) Squamous cell carcinoma Lung  
5q11 add(5)(q11) Squamous cell carcinoma Lung  
5q11 del(5)(q11) Squamous cell carcinoma Lung  
5q13 del(5)(q13) Squamous cell carcinoma Lung  
6p10 i(6)(p10) Squamous cell carcinoma Lung  
6q11 add(6)(q11) Squamous cell carcinoma Lung  
6q12 del(6)(q12) Squamous cell carcinoma Lung  
6q16 del(6)(q16) Squamous cell carcinoma Lung  
6q21 del(6)(q21) Squamous cell carcinoma Lung  
6q23 del(6)(q23) Squamous cell carcinoma Lung  
7p10 i(7)(p10) Squamous cell carcinoma Lung  
7q10 der(1;7)(p10;q10) Squamous cell carcinoma Lung  
7q10 i(7)(q10) Squamous cell carcinoma Lung  
7q11 add(7)(q11) Squamous cell carcinoma Lung  
7q11 del(7)(q11) Squamous cell carcinoma Lung  
7q11 del(7)(q11q22) Squamous cell carcinoma Lung  
7q22 del(7)(q11q22) Squamous cell carcinoma Lung  
7q22 del(7)(q22) Squamous cell carcinoma Lung  
7q32 del(7)(q32) Squamous cell carcinoma Lung  
7q36 add(7)(q36) Squamous cell carcinoma Lung  
8p21 add(8)(p21) Squamous cell carcinoma Lung  
8q10 i(8)(q10) Squamous cell carcinoma Lung  
8q12 del(8)(q12) Squamous cell carcinoma Lung  
8q22 del(8)(q22) Squamous cell carcinoma Lung  
9p13 del(9)(p13) Squamous cell carcinoma Lung  
9p21 del(9)(p21) Squamous cell carcinoma Lung  
9q10 der(9;15)(q10;q10) Squamous cell carcinoma Lung  
9q10 i(9)(q10) Squamous cell carcinoma Lung  
9q11 add(9)(q11) Squamous cell carcinoma Lung  
9q22 del(9)(q22) Squamous cell carcinoma Lung  
10p11 add(10)(p11) Squamous cell carcinoma Lung  
10q10 i(10)(q10) Squamous cell carcinoma Lung  
11p11 add(11)(p11) Squamous cell carcinoma Lung  
11p11 del(11)(p11) Squamous cell carcinoma Lung  
11p15 add(11)(p15) Squamous cell carcinoma Lung  
11q11 der(11)t(11;12)(q11;q11) Squamous cell carcinoma Lung  
11q12 der(19)t(11;19)(q12;q13) Squamous cell carcinoma Lung  
12p13 add(12)(p13) Squamous cell carcinoma Lung  
12q11 der(11)t(11;12)(q11;q11) Squamous cell carcinoma Lung  
12q24 add(12)(q24) Squamous cell carcinoma Lung  
13p11 add(13)(p11) Squamous cell carcinoma Lung  
13q10 der(13;15)(q10;q10) Squamous cell carcinoma Lung  
13q10 i(13)(q10) Squamous cell carcinoma Lung  
14p11 add(14)(p11) Squamous cell carcinoma Lung  
14p12 add(14)(p12) Squamous cell carcinoma Lung  
14q10 der(14;15)(q10;q10) Squamous cell carcinoma Lung  
14q10 der(14;21)(q10;q10) Squamous cell carcinoma Lung  
14q10 i(14)(q10) Squamous cell carcinoma Lung  
14q32 add(14)(q32) Squamous cell carcinoma Lung  
15p11 add(15)(p11) Squamous cell carcinoma Lung  
15p12 add(15)(p12) Squamous cell carcinoma Lung  
15q10 der(13;15)(q10;q10) Squamous cell carcinoma Lung  
15q10 der(14;15)(q10;q10) Squamous cell carcinoma Lung  
15q10 der(9;15)(q10;q10) Squamous cell carcinoma Lung  
15q10 i(15)(q10) Squamous cell carcinoma Lung  
16p13 add(16)(p13) Squamous cell carcinoma Lung  
16q24 add(16)(q24) Squamous cell carcinoma Lung  
17p11 add(17)(p11) Squamous cell carcinoma Lung  
17p11 del(17)(p11) Squamous cell carcinoma Lung  
19p11 add(19)(p11) Squamous cell carcinoma Lung  
19p12 add(19)(p12) Squamous cell carcinoma Lung  
19p13 add(19)(p13) Squamous cell carcinoma Lung  
19q13 add(19)(q13) Squamous cell carcinoma Lung  
19q13 der(19)t(11;19)(q12;q13) Squamous cell carcinoma Lung  
20p13 add(20)(p13) Squamous cell carcinoma Lung  
21p11 add(21)(p11) Squamous cell carcinoma Lung  
21q10 der(14;21)(q10;q10) Squamous cell carcinoma Lung  
21q10 i(21)(q10) Squamous cell carcinoma Lung  
22p11 add(22)(p11) Squamous cell carcinoma Lung  
22p12 add(22)(p12) Squamous cell carcinoma Lung  

Band Abnormality Morphology Topography Cases Genes
22q11 add(22)(q11) Squamous cell carcinoma Lung  
Xp11 add(X)(p11) Squamous cell carcinoma Lung  
Xq22 add(X)(q22) Squamous cell carcinoma Lung  
Xq24 del(X)(q24) Squamous cell carcinoma Lung  

Numerical Chromosomal Trisomy Abnormalities

Abnormality Morphology Topography Cases Genes
+1 Squamous cell carcinoma Lung 10   
+2 Squamous cell carcinoma Lung  
+3 Squamous cell carcinoma Lung  
+4 Squamous cell carcinoma Lung  
+5 Squamous cell carcinoma Lung  
+6 Squamous cell carcinoma Lung  
+7 Squamous cell carcinoma Lung 30   
+8 Squamous cell carcinoma Lung  
+9 Squamous cell carcinoma Lung 11   
+10 Squamous cell carcinoma Lung  
+11 Squamous cell carcinoma Lung  
+12 Squamous cell carcinoma Lung 11   
+13 Squamous cell carcinoma Lung  
+14 Squamous cell carcinoma Lung  
+15 Squamous cell carcinoma Lung  
+16 Squamous cell carcinoma Lung  
+17 Squamous cell carcinoma Lung  
+18 Squamous cell carcinoma Lung  
+19 Squamous cell carcinoma Lung  
+20 Squamous cell carcinoma Lung 17   
+21 Squamous cell carcinoma Lung  
+22 Squamous cell carcinoma Lung  
+X Squamous cell carcinoma Lung  
+Y Squamous cell carcinoma Lung  

Numerical Chromosomal Monosomy Abnormalities

Abnormality Morphology Topography Cases Genes
-1 Squamous cell carcinoma Lung 19   
-2 Squamous cell carcinoma Lung 12   
-3 Squamous cell carcinoma Lung 19   
-4 Squamous cell carcinoma Lung 33   
-5 Squamous cell carcinoma Lung 26   
-6 Squamous cell carcinoma Lung 25   
-7 Squamous cell carcinoma Lung 10   
-8 Squamous cell carcinoma Lung 28   
-9 Squamous cell carcinoma Lung 33   
-10 Squamous cell carcinoma Lung 34   
-11 Squamous cell carcinoma Lung 24   
-12 Squamous cell carcinoma Lung 16   
-13 Squamous cell carcinoma Lung 36   
-14 Squamous cell carcinoma Lung 33   
-15 Squamous cell carcinoma Lung 42   
-16 Squamous cell carcinoma Lung 31   
-17 Squamous cell carcinoma Lung 27   
-18 Squamous cell carcinoma Lung 36   
-19 Squamous cell carcinoma Lung 23   
-20 Squamous cell carcinoma Lung 25   
-21 Squamous cell carcinoma Lung 37   
-22 Squamous cell carcinoma Lung 32   
-X Squamous cell carcinoma Lung 25   
-Y Squamous cell carcinoma Lung 71