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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
Aberration type:




Expand Topography List:

Expand Morphology List:

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[Full Text]

Balanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
2q37 t(2;5)(q37;q32) Adenocarcinoma Ovary  
3p13 inv(3)(p13p25) Adenocarcinoma Ovary  
3p25 inv(3)(p13p25) Adenocarcinoma Ovary  
3q21 t(3;19)(q21;q13) Adenocarcinoma Ovary  
5q32 t(2;5)(q37;q32) Adenocarcinoma Ovary  
6q21 t(6;14)(q21;q24) Adenocarcinoma Ovary  
14q24 t(6;14)(q21;q24) Adenocarcinoma Ovary  
19q13 t(3;19)(q21;q13) Adenocarcinoma Ovary  

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p10 del(1)(p10) Adenocarcinoma Ovary  
1p10 der(1;6)(p10;p10) Adenocarcinoma Ovary  
1p10 i(1)(p10) Adenocarcinoma Ovary  
1p11 add(1)(p11) Adenocarcinoma Ovary  
1p12 del(1)(p12) Adenocarcinoma Ovary  
1p13 add(1)(p13) Adenocarcinoma Ovary  
1p13 del(1)(p13) Adenocarcinoma Ovary  
1p21 del(1)(p21) Adenocarcinoma Ovary  
1p22 add(1)(p22) Adenocarcinoma Ovary  
1p22 del(1)(p22) Adenocarcinoma Ovary  
1p31 add(1)(p31) Adenocarcinoma Ovary  
1p31 del(1)(p31) Adenocarcinoma Ovary  
1p31 der(1)del(1)(p31)del(1)(q21) Adenocarcinoma Ovary  
1p32 add(1)(p32) Adenocarcinoma Ovary  
1p32 del(1)(p32) Adenocarcinoma Ovary  
1p33 add(1)(p33) Adenocarcinoma Ovary  
1p34 add(1)(p34) Adenocarcinoma Ovary  
1p35 del(1)(p35) Adenocarcinoma Ovary  
1p36 add(1)(p36) Adenocarcinoma Ovary 28   
1q10 i(1)(q10) Adenocarcinoma Ovary 14   
1q11 add(1)(q11) Adenocarcinoma Ovary  
1q11 del(1)(q11) Adenocarcinoma Ovary  
1q12 add(1)(q12) Adenocarcinoma Ovary  
1q12 del(1)(q12) Adenocarcinoma Ovary  
1q21 add(1)(q21) Adenocarcinoma Ovary  
1q21 del(1)(q21) Adenocarcinoma Ovary 16   
1q21 der(1)del(1)(p31)del(1)(q21) Adenocarcinoma Ovary  
1q21 dup(1)(q21q32) Adenocarcinoma Ovary  
1q23 del(1)(q23) Adenocarcinoma Ovary  
1q25 add(1)(q25) Adenocarcinoma Ovary  
1q25 del(1)(q25) Adenocarcinoma Ovary  
1q25 der(3)t(1;3)(q25;q25) Adenocarcinoma Ovary  
1q31 del(1)(q31) Adenocarcinoma Ovary  
1q32 add(1)(q32) Adenocarcinoma Ovary  
1q32 del(1)(q32) Adenocarcinoma Ovary  
1q32 dup(1)(q21q32) Adenocarcinoma Ovary  
1q42 add(1)(q42) Adenocarcinoma Ovary  
1q42 del(1)(q42) Adenocarcinoma Ovary  
1q44 add(1)(q44) Adenocarcinoma Ovary  
2p13 del(2)(p13) Adenocarcinoma Ovary  
2p21 del(2)(p21) Adenocarcinoma Ovary  
2p23 add(2)(p23) Adenocarcinoma Ovary  
2p23 del(2)(p23) Adenocarcinoma Ovary  
2p25 add(2)(p25) Adenocarcinoma Ovary  
2q10 i(2)(q10) Adenocarcinoma Ovary  
2q37 add(2)(q37) Adenocarcinoma Ovary  
3p11 add(3)(p11) Adenocarcinoma Ovary  
3p12 del(3)(p12) Adenocarcinoma Ovary  
3p12 der(3)del(3)(p12)del(3)(q21) Adenocarcinoma Ovary  
3p13 add(3)(p13) Adenocarcinoma Ovary  
3p13 del(3)(p13) Adenocarcinoma Ovary  
3p14 del(3)(p14) Adenocarcinoma Ovary  
3p21 add(3)(p21) Adenocarcinoma Ovary  
3p21 del(3)(p21) Adenocarcinoma Ovary  
3p21 del(3)(p21p25) Adenocarcinoma Ovary  
3p23 del(3)(p23) Adenocarcinoma Ovary  
3p24 add(3)(p24) Adenocarcinoma Ovary  
3p25 add(3)(p25) Adenocarcinoma Ovary  
3p25 del(3)(p21p25) Adenocarcinoma Ovary  
3p26 add(3)(p26) Adenocarcinoma Ovary  
3q10 i(3)(q10) Adenocarcinoma Ovary  
3q11 del(3)(q11) Adenocarcinoma Ovary  
3q12 del(3)(q12) Adenocarcinoma Ovary  
3q13 add(3)(q13) Adenocarcinoma Ovary  
3q13 del(3)(q13) Adenocarcinoma Ovary  
3q21 del(3)(q21) Adenocarcinoma Ovary 17   
3q21 der(3)del(3)(p12)del(3)(q21) Adenocarcinoma Ovary  
3q23 del(3)(q23) Adenocarcinoma Ovary  
3q25 der(3)t(1;3)(q25;q25) Adenocarcinoma Ovary  
3q26 add(3)(q26) Adenocarcinoma Ovary  
3q27 add(3)(q27) Adenocarcinoma Ovary  
3q28 add(3)(q28) Adenocarcinoma Ovary  
3q29 add(3)(q29) Adenocarcinoma Ovary  
4p10 del(4)(p10) Adenocarcinoma Ovary  
4p12 del(4)(p12) Adenocarcinoma Ovary  
4p14 add(4)(p14) Adenocarcinoma Ovary  
4p14 del(4)(p14) Adenocarcinoma Ovary  
4p15 add(4)(p15) Adenocarcinoma Ovary  
4p16 add(4)(p16) Adenocarcinoma Ovary  
4q21 del(4)(q21) Adenocarcinoma Ovary  
4q22 del(4)(q22) Adenocarcinoma Ovary  
4q35 add(4)(q35) Adenocarcinoma Ovary  
5p10 i(5)(p10) Adenocarcinoma Ovary 16   
5p13 add(5)(p13) Adenocarcinoma Ovary  
5p15 add(5)(p15) Adenocarcinoma Ovary  
5q35 add(5)(q35) Adenocarcinoma Ovary  
6p10 der(1;6)(p10;p10) Adenocarcinoma Ovary  
6p10 i(6)(p10) Adenocarcinoma Ovary  
6p12 der(19)t(6;19)(p12;q13) Adenocarcinoma Ovary  
6p21 add(6)(p21) Adenocarcinoma Ovary  
6p21 del(6)(p21) Adenocarcinoma Ovary  
6p22 add(6)(p22) Adenocarcinoma Ovary  
6p25 add(6)(p25) Adenocarcinoma Ovary  
6q12 del(6)(q12) Adenocarcinoma Ovary  
6q13 add(6)(q13) Adenocarcinoma Ovary  
6q13 del(6)(q13) Adenocarcinoma Ovary  
6q14 del(6)(q14) Adenocarcinoma Ovary  
6q15 del(6)(q15) Adenocarcinoma Ovary  
6q16 del(6)(q16) Adenocarcinoma Ovary  
6q21 add(6)(q21) Adenocarcinoma Ovary  

Band Abnormality Morphology Topography Cases Genes
6q21 del(6)(q21) Adenocarcinoma Ovary 23   
6q23 del(6)(q23) Adenocarcinoma Ovary  
6q24 del(6)(q24) Adenocarcinoma Ovary 10   
6q25 add(6)(q25) Adenocarcinoma Ovary  
6q25 del(6)(q25) Adenocarcinoma Ovary 11   
6q26 del(6)(q26) Adenocarcinoma Ovary  
6q27 add(6)(q27) Adenocarcinoma Ovary  
6q27 del(6)(q27) Adenocarcinoma Ovary  
7p11 add(7)(p11) Adenocarcinoma Ovary  
7p13 add(7)(p13) Adenocarcinoma Ovary  
7p13 del(7)(p13) Adenocarcinoma Ovary  
7p15 add(7)(p15) Adenocarcinoma Ovary  
7p15 del(7)(p15) Adenocarcinoma Ovary  
7p15 der(7)add(7)(p15)add(7)(q36) Adenocarcinoma Ovary  
7p21 add(7)(p21) Adenocarcinoma Ovary  
7p22 add(7)(p22) Adenocarcinoma Ovary 11   
7q10 i(7)(q10) Adenocarcinoma Ovary  
7q11 add(7)(q11) Adenocarcinoma Ovary  
7q11 del(7)(q11) Adenocarcinoma Ovary  
7q21 del(7)(q21) Adenocarcinoma Ovary  
7q22 add(7)(q22) Adenocarcinoma Ovary  
7q22 del(7)(q22) Adenocarcinoma Ovary  
7q31 del(7)(q31) Adenocarcinoma Ovary  
7q32 del(7)(q32) Adenocarcinoma Ovary  
7q34 add(7)(q34) Adenocarcinoma Ovary  
7q36 add(7)(q36) Adenocarcinoma Ovary  
7q36 der(7)add(7)(p15)add(7)(q36) Adenocarcinoma Ovary  
8p11 add(8)(p11) Adenocarcinoma Ovary  
8p21 add(8)(p21) Adenocarcinoma Ovary  
8p21 del(8)(p21) Adenocarcinoma Ovary  
8p23 add(8)(p23) Adenocarcinoma Ovary  
8q10 i(8)(q10) Adenocarcinoma Ovary 12   
8q11 der(17)t(8;17)(q11;p13) Adenocarcinoma Ovary  
8q22 add(8)(q22) Adenocarcinoma Ovary  
8q22 del(8)(q22) Adenocarcinoma Ovary  
8q24 add(8)(q24) Adenocarcinoma Ovary  
9p13 add(9)(p13) Adenocarcinoma Ovary  
9p13 del(9)(p13) Adenocarcinoma Ovary  
9p22 add(9)(p22) Adenocarcinoma Ovary  
9p22 del(9)(p22) Adenocarcinoma Ovary  
9p23 del(9)(p23) Adenocarcinoma Ovary  
9p24 add(9)(p24) Adenocarcinoma Ovary  
9q12 del(9)(q12) Adenocarcinoma Ovary  
9q22 add(9)(q22) Adenocarcinoma Ovary  
9q34 add(9)(q34) Adenocarcinoma Ovary 11   
10p12 del(10)(p12) Adenocarcinoma Ovary  
10p13 add(10)(p13) Adenocarcinoma Ovary  
10p13 del(10)(p13) Adenocarcinoma Ovary  
10p15 add(10)(p15) Adenocarcinoma Ovary  
10q22 add(10)(q22) Adenocarcinoma Ovary  
10q23 del(10)(q23) Adenocarcinoma Ovary  
10q24 add(10)(q24) Adenocarcinoma Ovary  
10q24 del(10)(q24) Adenocarcinoma Ovary  
10q25 del(10)(q25) Adenocarcinoma Ovary  
10q26 add(10)(q26) Adenocarcinoma Ovary  
11p11 add(11)(p11) Adenocarcinoma Ovary  
11p11 del(11)(p11) Adenocarcinoma Ovary  
11p13 add(11)(p13) Adenocarcinoma Ovary  
11p13 del(11)(p13) Adenocarcinoma Ovary  
11p14 add(11)(p14) Adenocarcinoma Ovary  
11p14 del(11)(p14) Adenocarcinoma Ovary  
11p15 add(11)(p15) Adenocarcinoma Ovary 33   
11q10 i(11)(q10) Adenocarcinoma Ovary  
11q13 der(19)t(11;19)(q13;p13) Adenocarcinoma Ovary  
11q14 add(11)(q14) Adenocarcinoma Ovary  
11q23 add(11)(q23) Adenocarcinoma Ovary 13   
11q23 del(11)(q23) Adenocarcinoma Ovary  
11q25 add(11)(q25) Adenocarcinoma Ovary  
12p10 i(12)(p10) Adenocarcinoma Ovary  
12p11 add(12)(p11) Adenocarcinoma Ovary  
12p11 del(12)(p11) Adenocarcinoma Ovary  
12p12 add(12)(p12) Adenocarcinoma Ovary  
12p12 del(12)(p12) Adenocarcinoma Ovary  
12p13 add(12)(p13) Adenocarcinoma Ovary 11   
12q12 add(12)(q12) Adenocarcinoma Ovary  
12q24 add(12)(q24) Adenocarcinoma Ovary  
13p11 add(13)(p11) Adenocarcinoma Ovary  
13p13 add(13)(p13) Adenocarcinoma Ovary  
13q10 der(13;14)(q10;q10) Adenocarcinoma Ovary  
13q10 i(13)(q10) Adenocarcinoma Ovary  
13q32 del(13)(q32) Adenocarcinoma Ovary  
14p13 add(14)(p13) Adenocarcinoma Ovary  
14q10 der(13;14)(q10;q10) Adenocarcinoma Ovary  
14q10 der(14;15)(q10;q10) Adenocarcinoma Ovary  
15p11 add(15)(p11) Adenocarcinoma Ovary  
15p12 add(15)(p12) Adenocarcinoma Ovary  
15p13 add(15)(p13) Adenocarcinoma Ovary  
15q10 der(14;15)(q10;q10) Adenocarcinoma Ovary  
15q10 i(15)(q10) Adenocarcinoma Ovary  
16p11 add(16)(p11) Adenocarcinoma Ovary  
16p11 del(16)(p11) Adenocarcinoma Ovary  
16p13 add(16)(p13) Adenocarcinoma Ovary  
16q13 add(16)(q13) Adenocarcinoma Ovary  
16q22 del(16)(q22) Adenocarcinoma Ovary  
16q24 add(16)(q24) Adenocarcinoma Ovary  
17p13 add(17)(p13) Adenocarcinoma Ovary  
17p13 der(17)t(8;17)(q11;p13) Adenocarcinoma Ovary  
17q10 i(17)(q10) Adenocarcinoma Ovary 17   
17q21 add(17)(q21) Adenocarcinoma Ovary  
17q21 der(19)t(17;19)(q21;p13) Adenocarcinoma Ovary  

Band Abnormality Morphology Topography Cases Genes
17q25 add(17)(q25) Adenocarcinoma Ovary  
18q23 add(18)(q23) Adenocarcinoma Ovary  
19p11 add(19)(p11) Adenocarcinoma Ovary  
19p13 add(19)(p13) Adenocarcinoma Ovary 29   
19p13 del(19)(p13) Adenocarcinoma Ovary  
19p13 der(19)add(19)(p13)add(19)(q13) Adenocarcinoma Ovary  
19p13 der(19)t(11;19)(q13;p13) Adenocarcinoma Ovary  
19p13 der(19)t(17;19)(q21;p13) Adenocarcinoma Ovary  
19q11 add(19)(q11) Adenocarcinoma Ovary  
19q13 add(19)(q13) Adenocarcinoma Ovary 24   
19q13 der(19)add(19)(p13)add(19)(q13) Adenocarcinoma Ovary  
19q13 der(19)t(6;19)(p12;q13) Adenocarcinoma Ovary  
20q13 add(20)(q13) Adenocarcinoma Ovary  
21q10 i(21)(q10) Adenocarcinoma Ovary  
21q22 add(21)(q22) Adenocarcinoma Ovary  
22q10 i(22)(q10) Adenocarcinoma Ovary  
22q12 del(22)(q12) Adenocarcinoma Ovary  
22q13 add(22)(q13) Adenocarcinoma Ovary  
Xp10 i(X)(p10) Adenocarcinoma Ovary  
Xp22 add(X)(p22) Adenocarcinoma Ovary  
Xq22 del(X)(q22) Adenocarcinoma Ovary  
Xq23 del(X)(q23) Adenocarcinoma Ovary  

Numerical Chromosomal Trisomy Abnormalities

Abnormality Morphology Topography Cases Genes
+1 Adenocarcinoma Ovary 38   
+2 Adenocarcinoma Ovary 36   
+3 Adenocarcinoma Ovary 43   
+4 Adenocarcinoma Ovary  
+5 Adenocarcinoma Ovary 24   
+6 Adenocarcinoma Ovary 13   
+7 Adenocarcinoma Ovary 42   
+8 Adenocarcinoma Ovary 23   
+9 Adenocarcinoma Ovary 13   
+10 Adenocarcinoma Ovary 18   
+11 Adenocarcinoma Ovary 19   
+12 Adenocarcinoma Ovary 69   
+13 Adenocarcinoma Ovary 15   
+14 Adenocarcinoma Ovary 14   
+15 Adenocarcinoma Ovary  
+16 Adenocarcinoma Ovary 14   
+17 Adenocarcinoma Ovary  
+18 Adenocarcinoma Ovary  
+19 Adenocarcinoma Ovary 17   
+20 Adenocarcinoma Ovary 41   
+21 Adenocarcinoma Ovary 18   
+22 Adenocarcinoma Ovary  
+X Adenocarcinoma Ovary  

Numerical Chromosomal Monosomy Abnormalities

Abnormality Morphology Topography Cases Genes
-1 Adenocarcinoma Ovary 28   
-2 Adenocarcinoma Ovary 46   
-3 Adenocarcinoma Ovary 30   
-4 Adenocarcinoma Ovary 69   
-5 Adenocarcinoma Ovary 61   
-6 Adenocarcinoma Ovary 71   
-7 Adenocarcinoma Ovary 51   
-8 Adenocarcinoma Ovary 89   
-9 Adenocarcinoma Ovary 60   
-10 Adenocarcinoma Ovary 63   
-11 Adenocarcinoma Ovary 57   
-12 Adenocarcinoma Ovary 44   
-13 Adenocarcinoma Ovary 90   
-14 Adenocarcinoma Ovary 99   
-15 Adenocarcinoma Ovary 109   
-16 Adenocarcinoma Ovary 70   
-17 Adenocarcinoma Ovary 95   
-18 Adenocarcinoma Ovary 79   
-19 Adenocarcinoma Ovary 75   
-20 Adenocarcinoma Ovary 60   
-21 Adenocarcinoma Ovary 76   
-22 Adenocarcinoma Ovary 101   
-X Adenocarcinoma Ovary 123