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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
Aberration type:




Expand Topography List:

Expand Morphology List:

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[Full Text]

Balanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p34 t(X;1)(p11;p34) Adenocarcinoma Kidney 10  SFPQ/TFE3,TFE3/SFPQ
1p36 inv(1)(p36q21) Adenocarcinoma Kidney  
1q21 inv(1)(p36q21) Adenocarcinoma Kidney  
1q21 t(X;1)(p11;q21) Adenocarcinoma Kidney 30   
2p23 inv(2)(p23q11) Adenocarcinoma Kidney  
2q11 inv(2)(p23q11) Adenocarcinoma Kidney  
6p21 t(6;11)(p21;q12) Adenocarcinoma Kidney  
6p21 t(6;11)(p21;q13) Adenocarcinoma Kidney MALAT1/TFEB
7p15 inv(7)(p15q34) Adenocarcinoma Kidney  
7q34 inv(7)(p15q34) Adenocarcinoma Kidney  
9p11 t(9;15)(p11;q11) Adenocarcinoma Kidney  
11q12 t(6;11)(p21;q12) Adenocarcinoma Kidney  
11q13 t(6;11)(p21;q13) Adenocarcinoma Kidney MALAT1/TFEB
15q11 t(9;15)(p11;q11) Adenocarcinoma Kidney  
17q23 t(X;17)(p11;q23) Adenocarcinoma Kidney CLTC/TFE3
17q25 t(X;17)(p11;q25) Adenocarcinoma Kidney 15  ASPSCR1/TFE3
Xp11 t(X;1)(p11;p34) Adenocarcinoma Kidney 10  SFPQ/TFE3,TFE3/SFPQ
Xp11 t(X;1)(p11;q21) Adenocarcinoma Kidney 30   
Xp11 t(X;17)(p11;q23) Adenocarcinoma Kidney CLTC/TFE3
Xp11 t(X;17)(p11;q25) Adenocarcinoma Kidney 15  ASPSCR1/TFE3

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p11 add(1)(p11) Adenocarcinoma Kidney  
1p11 del(1)(p11) Adenocarcinoma Kidney  
1p12 del(1)(p12) Adenocarcinoma Kidney  
1p13 add(1)(p13) Adenocarcinoma Kidney  
1p13 del(1)(p13) Adenocarcinoma Kidney  
1p13 der(1)t(1;14)(p13;q11) Adenocarcinoma Kidney  
1p21 del(1)(p21) Adenocarcinoma Kidney  
1p22 del(1)(p22) Adenocarcinoma Kidney  
1p31 del(1)(p31) Adenocarcinoma Kidney  
1p32 add(1)(p32) Adenocarcinoma Kidney  
1p32 del(1)(p32) Adenocarcinoma Kidney  
1p34 del(1)(p34) Adenocarcinoma Kidney  
1p36 add(1)(p36) Adenocarcinoma Kidney 12   
1p36 del(1)(p36) Adenocarcinoma Kidney  
1q10 i(1)(q10) Adenocarcinoma Kidney 25   
1q11 del(1)(q11) Adenocarcinoma Kidney  
1q12 add(1)(q12) Adenocarcinoma Kidney  
1q12 del(1)(q12) Adenocarcinoma Kidney  
1q21 add(1)(q21) Adenocarcinoma Kidney  
1q21 del(1)(q21) Adenocarcinoma Kidney  
1q21 der(3)t(1;3)(q21;p13) Adenocarcinoma Kidney  
1q32 del(1)(q32) Adenocarcinoma Kidney  
1q42 add(1)(q42) Adenocarcinoma Kidney  
2p10 i(2)(p10) Adenocarcinoma Kidney  
2p11 del(2)(p11) Adenocarcinoma Kidney  
2p21 del(2)(p21) Adenocarcinoma Kidney  
2p25 add(2)(p25) Adenocarcinoma Kidney  
2q21 del(2)(q21) Adenocarcinoma Kidney  
2q23 der(3)t(2;3)(q23;p13) Adenocarcinoma Kidney  
2q33 add(2)(q33) Adenocarcinoma Kidney  
2q33 der(2)t(2;3)(q33;q13) Adenocarcinoma Kidney  
2q35 der(2)t(2;3)(q35;q21) Adenocarcinoma Kidney  
2q37 add(2)(q37) Adenocarcinoma Kidney  
3p10 add(3)(p10) Adenocarcinoma Kidney  
3p11 add(3)(p11) Adenocarcinoma Kidney  
3p11 del(3)(p11) Adenocarcinoma Kidney 12   
3p11 del(3)(p11p21) Adenocarcinoma Kidney  
3p11 der(3)t(3;6)(p11;p11) Adenocarcinoma Kidney  
3p11 der(3)t(3;8)(p11;q11) Adenocarcinoma Kidney  
3p12 add(3)(p12) Adenocarcinoma Kidney  
3p12 del(3)(p12) Adenocarcinoma Kidney 17   
3p12 del(3)(p12p21) Adenocarcinoma Kidney  
3p12 der(3)t(3;5)(p12;q13) Adenocarcinoma Kidney  
3p12 der(3)t(3;5)(p12;q15) Adenocarcinoma Kidney  
3p12 der(3)t(3;5)(p12;q22) Adenocarcinoma Kidney  
3p12 der(3)t(3;5)(p12;q31) Adenocarcinoma Kidney  
3p12 der(3)t(3;8)(p12;q11) Adenocarcinoma Kidney  
3p13 add(3)(p13) Adenocarcinoma Kidney 23   
3p13 del(3)(p13) Adenocarcinoma Kidney 24   
3p13 del(3)(p13p21) Adenocarcinoma Kidney  
3p13 der(3)t(1;3)(q21;p13) Adenocarcinoma Kidney  
3p13 der(3)t(2;3)(q23;p13) Adenocarcinoma Kidney  
3p13 der(3)t(3;5)(p13;q11) Adenocarcinoma Kidney  
3p13 der(3)t(3;5)(p13;q13) Adenocarcinoma Kidney  
3p13 der(3)t(3;5)(p13;q15) Adenocarcinoma Kidney  
3p13 der(3)t(3;5)(p13;q22) Adenocarcinoma Kidney 44   
3p13 der(3)t(3;5)(p13;q31) Adenocarcinoma Kidney  
3p13 der(3)t(3;8)(p13;q13) Adenocarcinoma Kidney  
3p13 der(3)t(3;9)(p13;q12) Adenocarcinoma Kidney  
3p14 add(3)(p14) Adenocarcinoma Kidney  
3p14 del(3)(p14) Adenocarcinoma Kidney 28   
3p14 del(3)(p14p21) Adenocarcinoma Kidney  
3p14 del(3)(p14p23) Adenocarcinoma Kidney  
3p14 der(3)del(3)(p14)del(3)(q21) Adenocarcinoma Kidney  
3p14 der(3)t(3;5)(p14;q13) Adenocarcinoma Kidney  
3p14 der(3)t(3;5)(p14;q15) Adenocarcinoma Kidney  
3p14 der(3)t(3;5)(p14;q22) Adenocarcinoma Kidney  
3p14 der(3)t(3;5)(p14;q31) Adenocarcinoma Kidney  
3p21 add(3)(p21) Adenocarcinoma Kidney 14   
3p21 del(3)(p11p21) Adenocarcinoma Kidney  
3p21 del(3)(p12p21) Adenocarcinoma Kidney  
3p21 del(3)(p13p21) Adenocarcinoma Kidney  
3p21 del(3)(p14p21) Adenocarcinoma Kidney  
3p21 del(3)(p21) Adenocarcinoma Kidney  
3p21 del(3)(p21p23) Adenocarcinoma Kidney  
3p21 del(3)(p21p24) Adenocarcinoma Kidney  
3p21 der(3)t(3;5)(p21;q15) Adenocarcinoma Kidney  
3p21 der(3)t(3;5)(p21;q22) Adenocarcinoma Kidney  
3p21 der(3)t(3;5)(p21;q31) Adenocarcinoma Kidney  
3p22 add(3)(p22) Adenocarcinoma Kidney  
3p23 del(3)(p14p23) Adenocarcinoma Kidney  
3p23 del(3)(p21p23) Adenocarcinoma Kidney  
3p24 del(3)(p21p24) Adenocarcinoma Kidney  
3q10 der(3;6)(q10;p10) Adenocarcinoma Kidney  
3q10 der(3;8)(q10;q10) Adenocarcinoma Kidney  
3q11 der(11)t(3;11)(q11;p15) Adenocarcinoma Kidney  
3q11 der(17)t(3;17)(q11;q25) Adenocarcinoma Kidney  
3q11 der(19)t(3;19)(q11;p13) Adenocarcinoma Kidney  
3q11 der(6)t(3;6)(q11;q11) Adenocarcinoma Kidney  
3q11 der(8)t(3;8)(q11;p11) Adenocarcinoma Kidney  
3q12 der(20)t(3;20)(q12;q13) Adenocarcinoma Kidney  
3q13 del(3)(q13) Adenocarcinoma Kidney  
3q13 der(2)t(2;3)(q33;q13) Adenocarcinoma Kidney  
3q13 der(4)t(3;4)(q13;p15) Adenocarcinoma Kidney  
3q13 der(5)t(3;5)(q13;p13) Adenocarcinoma Kidney  
3q13 der(6)t(3;6)(q13;q16) Adenocarcinoma Kidney  
3q21 del(3)(q21) Adenocarcinoma Kidney  
3q21 der(2)t(2;3)(q35;q21) Adenocarcinoma Kidney  
3q21 der(3)del(3)(p14)del(3)(q21) Adenocarcinoma Kidney  
3q21 der(6)t(3;6)(q21;q15) Adenocarcinoma Kidney  

Band Abnormality Morphology Topography Cases Genes
3q21 der(6)t(3;6)(q21;q21) Adenocarcinoma Kidney  
3q21 der(7)t(3;7)(q21;p22) Adenocarcinoma Kidney  
3q21 der(7)t(3;7)(q21;q32) Adenocarcinoma Kidney  
3q27 add(3)(q27) Adenocarcinoma Kidney  
4p14 del(4)(p14) Adenocarcinoma Kidney  
4p15 add(4)(p15) Adenocarcinoma Kidney  
4p15 der(4)t(3;4)(q13;p15) Adenocarcinoma Kidney  
4p16 add(4)(p16) Adenocarcinoma Kidney  
4q21 add(4)(q21) Adenocarcinoma Kidney  
4q21 del(4)(q21) Adenocarcinoma Kidney  
4q25 del(4)(q25) Adenocarcinoma Kidney  
4q35 add(4)(q35) Adenocarcinoma Kidney  
5p10 i(5)(p10) Adenocarcinoma Kidney  
5p11 del(5)(p11) Adenocarcinoma Kidney  
5p13 der(5)t(3;5)(q13;p13) Adenocarcinoma Kidney  
5p15 add(5)(p15) Adenocarcinoma Kidney  
5p15 del(5)(p15) Adenocarcinoma Kidney  
5p15 der(5)t(5;5)(p15;q21) Adenocarcinoma Kidney  
5q11 der(3)t(3;5)(p13;q11) Adenocarcinoma Kidney  
5q13 del(5)(q13) Adenocarcinoma Kidney  
5q13 der(3)t(3;5)(p12;q13) Adenocarcinoma Kidney  
5q13 der(3)t(3;5)(p13;q13) Adenocarcinoma Kidney  
5q13 der(3)t(3;5)(p14;q13) Adenocarcinoma Kidney  
5q15 der(3)t(3;5)(p12;q15) Adenocarcinoma Kidney  
5q15 der(3)t(3;5)(p13;q15) Adenocarcinoma Kidney  
5q15 der(3)t(3;5)(p14;q15) Adenocarcinoma Kidney  
5q15 der(3)t(3;5)(p21;q15) Adenocarcinoma Kidney  
5q21 der(5)t(5;5)(p15;q21) Adenocarcinoma Kidney  
5q22 der(3)t(3;5)(p12;q22) Adenocarcinoma Kidney  
5q22 der(3)t(3;5)(p13;q22) Adenocarcinoma Kidney 44   
5q22 der(3)t(3;5)(p14;q22) Adenocarcinoma Kidney  
5q22 der(3)t(3;5)(p21;q22) Adenocarcinoma Kidney  
5q31 der(3)t(3;5)(p12;q31) Adenocarcinoma Kidney  
5q31 der(3)t(3;5)(p13;q31) Adenocarcinoma Kidney  
5q31 der(3)t(3;5)(p14;q31) Adenocarcinoma Kidney  
5q31 der(3)t(3;5)(p21;q31) Adenocarcinoma Kidney  
6p10 der(3;6)(q10;p10) Adenocarcinoma Kidney  
6p10 i(6)(p10) Adenocarcinoma Kidney  
6p11 der(3)t(3;6)(p11;p11) Adenocarcinoma Kidney  
6p25 add(6)(p25) Adenocarcinoma Kidney  
6q11 add(6)(q11) Adenocarcinoma Kidney  
6q11 der(6)t(3;6)(q11;q11) Adenocarcinoma Kidney  
6q13 del(6)(q13) Adenocarcinoma Kidney  
6q15 del(6)(q15) Adenocarcinoma Kidney  
6q15 der(6)t(3;6)(q21;q15) Adenocarcinoma Kidney  
6q16 del(6)(q16) Adenocarcinoma Kidney  
6q16 der(6)t(3;6)(q13;q16) Adenocarcinoma Kidney  
6q21 del(6)(q21) Adenocarcinoma Kidney 10   
6q21 der(6)t(3;6)(q21;q21) Adenocarcinoma Kidney  
6q22 del(6)(q22) Adenocarcinoma Kidney  
6q23 del(6)(q23) Adenocarcinoma Kidney  
7p11 del(7)(p11) Adenocarcinoma Kidney  
7p22 der(7)t(3;7)(q21;p22) Adenocarcinoma Kidney  
7q10 i(7)(q10) Adenocarcinoma Kidney  
7q11 del(7)(q11) Adenocarcinoma Kidney  
7q21 del(7)(q21) Adenocarcinoma Kidney  
7q22 del(7)(q22) Adenocarcinoma Kidney  
7q32 add(7)(q32) Adenocarcinoma Kidney  
7q32 del(7)(q32) Adenocarcinoma Kidney  
7q32 der(7)t(3;7)(q21;q32) Adenocarcinoma Kidney  
7q36 add(7)(q36) Adenocarcinoma Kidney  
8p11 add(8)(p11) Adenocarcinoma Kidney  
8p11 del(8)(p11) Adenocarcinoma Kidney  
8p11 der(8)t(3;8)(q11;p11) Adenocarcinoma Kidney  
8p11 der(8)t(8;14)(p11;q11) Adenocarcinoma Kidney  
8p12 del(8)(p12) Adenocarcinoma Kidney  
8p21 del(8)(p21) Adenocarcinoma Kidney  
8p23 add(8)(p23) Adenocarcinoma Kidney  
8q10 der(3;8)(q10;q10) Adenocarcinoma Kidney  
8q10 i(8)(q10) Adenocarcinoma Kidney 26   
8q11 der(3)t(3;8)(p11;q11) Adenocarcinoma Kidney  
8q11 der(3)t(3;8)(p12;q11) Adenocarcinoma Kidney  
8q13 der(3)t(3;8)(p13;q13) Adenocarcinoma Kidney  
8q22 del(8)(q22) Adenocarcinoma Kidney  
8q24 add(8)(q24) Adenocarcinoma Kidney  
9p10 i(9)(p10) Adenocarcinoma Kidney  
9p11 del(9)(p11) Adenocarcinoma Kidney  
9p13 add(9)(p13) Adenocarcinoma Kidney  
9p13 del(9)(p13) Adenocarcinoma Kidney  
9p21 del(9)(p21) Adenocarcinoma Kidney  
9p22 del(9)(p22) Adenocarcinoma Kidney  
9q10 i(9)(q10) Adenocarcinoma Kidney  
9q12 der(3)t(3;9)(p13;q12) Adenocarcinoma Kidney  
9q34 add(9)(q34) Adenocarcinoma Kidney  
10q10 i(10)(q10) Adenocarcinoma Kidney  
10q24 del(10)(q24) Adenocarcinoma Kidney  
11p13 add(11)(p13) Adenocarcinoma Kidney  
11p15 add(11)(p15) Adenocarcinoma Kidney  
11p15 der(11)t(3;11)(q11;p15) Adenocarcinoma Kidney  
11q13 add(11)(q13) Adenocarcinoma Kidney  
11q13 del(11)(q13) Adenocarcinoma Kidney  
11q14 del(11)(q14) Adenocarcinoma Kidney  
11q21 del(11)(q21) Adenocarcinoma Kidney  
11q23 add(11)(q23) Adenocarcinoma Kidney  
11q23 del(11)(q23) Adenocarcinoma Kidney  
11q25 add(11)(q25) Adenocarcinoma Kidney  
12p11 add(12)(p11) Adenocarcinoma Kidney  
12p11 del(12)(p11) Adenocarcinoma Kidney  
12p13 add(12)(p13) Adenocarcinoma Kidney  
12q10 i(12)(q10) Adenocarcinoma Kidney  

Band Abnormality Morphology Topography Cases Genes
12q22 del(12)(q22) Adenocarcinoma Kidney  
12q24 add(12)(q24) Adenocarcinoma Kidney  
13p11 add(13)(p11) Adenocarcinoma Kidney  
13p12 add(13)(p12) Adenocarcinoma Kidney  
13q14 del(13)(q14) Adenocarcinoma Kidney  
13q34 add(13)(q34) Adenocarcinoma Kidney  
14p12 add(14)(p12) Adenocarcinoma Kidney  
14p13 add(14)(p13) Adenocarcinoma Kidney  
14q11 der(1)t(1;14)(p13;q11) Adenocarcinoma Kidney  
14q11 der(8)t(8;14)(p11;q11) Adenocarcinoma Kidney  
14q13 del(14)(q13) Adenocarcinoma Kidney  
14q22 del(14)(q22) Adenocarcinoma Kidney  
14q24 del(14)(q24) Adenocarcinoma Kidney  
14q32 add(14)(q32) Adenocarcinoma Kidney  
15p11 add(15)(p11) Adenocarcinoma Kidney  
15p13 add(15)(p13) Adenocarcinoma Kidney  
15q22 del(15)(q22) Adenocarcinoma Kidney  
15q25 add(15)(q25) Adenocarcinoma Kidney  
15q26 add(15)(q26) Adenocarcinoma Kidney  
16p11 add(16)(p11) Adenocarcinoma Kidney  
16p13 add(16)(p13) Adenocarcinoma Kidney  
16q12 add(16)(q12) Adenocarcinoma Kidney  
16q22 del(16)(q22) Adenocarcinoma Kidney  
16q24 add(16)(q24) Adenocarcinoma Kidney  
17p11 add(17)(p11) Adenocarcinoma Kidney  
17p11 del(17)(p11) Adenocarcinoma Kidney  
17p12 add(17)(p12) Adenocarcinoma Kidney  
17p12 del(17)(p12) Adenocarcinoma Kidney  
17p13 add(17)(p13) Adenocarcinoma Kidney  
17q10 i(17)(q10) Adenocarcinoma Kidney  
17q25 add(17)(q25) Adenocarcinoma Kidney  
17q25 der(17)t(3;17)(q11;q25) Adenocarcinoma Kidney  
18p11 add(18)(p11) Adenocarcinoma Kidney  
18q21 del(18)(q21) Adenocarcinoma Kidney  
18q23 add(18)(q23) Adenocarcinoma Kidney  
19p13 add(19)(p13) Adenocarcinoma Kidney  
19p13 der(19)t(3;19)(q11;p13) Adenocarcinoma Kidney  
19q13 add(19)(q13) Adenocarcinoma Kidney  
20q13 der(20)t(3;20)(q12;q13) Adenocarcinoma Kidney  
21p11 add(21)(p11) Adenocarcinoma Kidney  
21q22 add(21)(q22) Adenocarcinoma Kidney  
22p11 add(22)(p11) Adenocarcinoma Kidney  
Xp11 del(X)(p11) Adenocarcinoma Kidney  
Yq12 del(Y)(q12) Adenocarcinoma Kidney  

Numerical Chromosomal Trisomy Abnormalities

Abnormality Morphology Topography Cases Genes
+1 Adenocarcinoma Kidney 16   
+2 Adenocarcinoma Kidney 94   
+3 Adenocarcinoma Kidney 91   
+4 Adenocarcinoma Kidney 31   
+5 Adenocarcinoma Kidney 145   
+6 Adenocarcinoma Kidney 23   
+7 Adenocarcinoma Kidney 445   
+8 Adenocarcinoma Kidney 47   
+9 Adenocarcinoma Kidney 23   
+10 Adenocarcinoma Kidney 51   
+11 Adenocarcinoma Kidney 33   
+12 Adenocarcinoma Kidney 195   
+13 Adenocarcinoma Kidney 50   
+14 Adenocarcinoma Kidney 10   
+15 Adenocarcinoma Kidney 19   
+16 Adenocarcinoma Kidney 203   
+17 Adenocarcinoma Kidney 198   
+18 Adenocarcinoma Kidney 39   
+19 Adenocarcinoma Kidney 51   
+20 Adenocarcinoma Kidney 176   
+21 Adenocarcinoma Kidney 54   
+22 Adenocarcinoma Kidney 33   
+X Adenocarcinoma Kidney 31   
+Y Adenocarcinoma Kidney 23   

Numerical Chromosomal Monosomy Abnormalities

Abnormality Morphology Topography Cases Genes
-1 Adenocarcinoma Kidney 73   
-2 Adenocarcinoma Kidney 37   
-3 Adenocarcinoma Kidney 210   
-4 Adenocarcinoma Kidney 77   
-5 Adenocarcinoma Kidney 44   
-6 Adenocarcinoma Kidney 104   
-7 Adenocarcinoma Kidney 17   
-8 Adenocarcinoma Kidney 151   
-9 Adenocarcinoma Kidney 145   
-10 Adenocarcinoma Kidney 90   
-11 Adenocarcinoma Kidney 49   
-12 Adenocarcinoma Kidney 21   
-13 Adenocarcinoma Kidney 108   
-14 Adenocarcinoma Kidney 278   
-15 Adenocarcinoma Kidney 89   
-16 Adenocarcinoma Kidney 33   
-17 Adenocarcinoma Kidney 76   
-18 Adenocarcinoma Kidney 123   
-19 Adenocarcinoma Kidney 41   
-20 Adenocarcinoma Kidney 26   
-21 Adenocarcinoma Kidney 89   
-22 Adenocarcinoma Kidney 92   
-X Adenocarcinoma Kidney 93   
-Y Adenocarcinoma Kidney 381