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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
Aberration type:




Expand Topography List:

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[Full Text]

Balanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1q32 t(1;2)(q32;q32) Splenic marginal zone B-cell lymphoma    
2p11 t(2;7)(p11;q21) Splenic marginal zone B-cell lymphoma   IGK/CDK6
2p11 t(2;7)(p11;q22) Splenic marginal zone B-cell lymphoma    
2q32 t(1;2)(q32;q32) Splenic marginal zone B-cell lymphoma    
3q27 t(3;14)(q27;q32) Splenic marginal zone B-cell lymphoma    
3q27 t(3;7)(q27;q32) Splenic marginal zone B-cell lymphoma    
4p13 t(4;14)(p13;q32) Splenic marginal zone B-cell lymphoma   IGH+
5p15 t(5;7)(p15;p11) Splenic marginal zone B-cell lymphoma   TERT+
6p12 t(6;14)(p12;q32) Splenic marginal zone B-cell lymphoma    
6p21 t(6;14)(p21;q32) Splenic marginal zone B-cell lymphoma   IGH/CCND3
7p11 t(5;7)(p15;p11) Splenic marginal zone B-cell lymphoma   TERT+
7q21 t(2;7)(p11;q21) Splenic marginal zone B-cell lymphoma   IGK/CDK6
7q22 t(2;7)(p11;q22) Splenic marginal zone B-cell lymphoma    
7q32 t(3;7)(q27;q32) Splenic marginal zone B-cell lymphoma    
9p13 t(9;14)(p13;q32) Splenic marginal zone B-cell lymphoma   IGH/PAX5
11p11 t(11;14)(p11;q32) Splenic marginal zone B-cell lymphoma   IGH+
11q13 t(11;14)(q13;q32) Splenic marginal zone B-cell lymphoma   15  CCND1+
14q32 t(11;14)(p11;q32) Splenic marginal zone B-cell lymphoma   IGH+
14q32 t(11;14)(q13;q32) Splenic marginal zone B-cell lymphoma   15  CCND1+
14q32 t(14;18)(q32;q21) Splenic marginal zone B-cell lymphoma    
14q32 t(14;19)(q32;q13) Splenic marginal zone B-cell lymphoma   IGH/BCL3
14q32 t(3;14)(q27;q32) Splenic marginal zone B-cell lymphoma    
14q32 t(4;14)(p13;q32) Splenic marginal zone B-cell lymphoma   IGH+
14q32 t(6;14)(p12;q32) Splenic marginal zone B-cell lymphoma    
14q32 t(6;14)(p21;q32) Splenic marginal zone B-cell lymphoma   IGH/CCND3
14q32 t(9;14)(p13;q32) Splenic marginal zone B-cell lymphoma   IGH/PAX5
18q21 t(14;18)(q32;q21) Splenic marginal zone B-cell lymphoma    
19q13 t(14;19)(q32;q13) Splenic marginal zone B-cell lymphoma   IGH/BCL3

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
3p13 add(3)(p13) Splenic marginal zone B-cell lymphoma    
3p13 del(3)(p13) Splenic marginal zone B-cell lymphoma    
3p23 del(3)(p23) Splenic marginal zone B-cell lymphoma    
3q26 add(3)(q26) Splenic marginal zone B-cell lymphoma    
3q27 add(3)(q27) Splenic marginal zone B-cell lymphoma   BCL6+
5q31 add(5)(q31) Splenic marginal zone B-cell lymphoma    
6q14 del(6)(q14q25) Splenic marginal zone B-cell lymphoma    
6q15 del(6)(q15) Splenic marginal zone B-cell lymphoma    
6q15 del(6)(q15q23) Splenic marginal zone B-cell lymphoma    
6q21 del(6)(q21q25) Splenic marginal zone B-cell lymphoma    
6q23 del(6)(q15q23) Splenic marginal zone B-cell lymphoma    
6q23 del(6)(q23) Splenic marginal zone B-cell lymphoma    
6q25 del(6)(q14q25) Splenic marginal zone B-cell lymphoma    
6q25 del(6)(q21q25) Splenic marginal zone B-cell lymphoma    
7q21 add(7)(q21) Splenic marginal zone B-cell lymphoma    
7q21 del(7)(q21) Splenic marginal zone B-cell lymphoma    
7q21 del(7)(q21q31) Splenic marginal zone B-cell lymphoma    
7q22 del(7)(q22) Splenic marginal zone B-cell lymphoma    
7q22 del(7)(q22q32) Splenic marginal zone B-cell lymphoma    
7q22 del(7)(q22q33) Splenic marginal zone B-cell lymphoma    
7q22 del(7)(q22q34) Splenic marginal zone B-cell lymphoma    
7q31 del(7)(q21q31) Splenic marginal zone B-cell lymphoma    
7q31 del(7)(q31) Splenic marginal zone B-cell lymphoma    
7q31 del(7)(q31q32) Splenic marginal zone B-cell lymphoma    
7q31 del(7)(q31q34) Splenic marginal zone B-cell lymphoma    
7q31 del(7)(q31q36) Splenic marginal zone B-cell lymphoma    
7q32 del(7)(q22q32) Splenic marginal zone B-cell lymphoma    
7q32 del(7)(q31q32) Splenic marginal zone B-cell lymphoma    
7q32 del(7)(q32) Splenic marginal zone B-cell lymphoma   12   
7q32 del(7)(q32q34) Splenic marginal zone B-cell lymphoma    
7q33 del(7)(q22q33) Splenic marginal zone B-cell lymphoma    
7q34 del(7)(q22q34) Splenic marginal zone B-cell lymphoma    
7q34 del(7)(q31q34) Splenic marginal zone B-cell lymphoma    
7q34 del(7)(q32q34) Splenic marginal zone B-cell lymphoma    
7q34 del(7)(q34q36) Splenic marginal zone B-cell lymphoma    
7q35 del(7)(q35) Splenic marginal zone B-cell lymphoma    
7q36 del(7)(q31q36) Splenic marginal zone B-cell lymphoma    
7q36 del(7)(q34q36) Splenic marginal zone B-cell lymphoma    
8p11 del(8)(p11) Splenic marginal zone B-cell lymphoma    
8p12 der(8)t(8;17)(p12;p11) Splenic marginal zone B-cell lymphoma    
8p21 der(8)t(8;12)(p21;q11) Splenic marginal zone B-cell lymphoma    
8q10 i(8)(q10) Splenic marginal zone B-cell lymphoma    
8q12 del(8)(q12) Splenic marginal zone B-cell lymphoma    
8q24 add(8)(q24) Splenic marginal zone B-cell lymphoma    
9p12 add(9)(p12) Splenic marginal zone B-cell lymphoma    
9p13 del(9)(p13p23) Splenic marginal zone B-cell lymphoma    
9p21 del(9)(p21) Splenic marginal zone B-cell lymphoma    
9p23 del(9)(p13p23) Splenic marginal zone B-cell lymphoma    
9q34 der(9)t(9;12)(q34;q13) Splenic marginal zone B-cell lymphoma    
10q22 del(10)(q22q24) Splenic marginal zone B-cell lymphoma    
10q24 add(10)(q24) Splenic marginal zone B-cell lymphoma    
10q24 del(10)(q22q24) Splenic marginal zone B-cell lymphoma    
10q24 del(10)(q24) Splenic marginal zone B-cell lymphoma    
11q13 del(11)(q13q23) Splenic marginal zone B-cell lymphoma    
11q21 del(11)(q21) Splenic marginal zone B-cell lymphoma    
11q23 del(11)(q13q23) Splenic marginal zone B-cell lymphoma    
12p13 add(12)(p13) Splenic marginal zone B-cell lymphoma    
12q11 der(8)t(8;12)(p21;q11) Splenic marginal zone B-cell lymphoma    
12q13 der(9)t(9;12)(q34;q13) Splenic marginal zone B-cell lymphoma    
13q14 del(13)(q14) Splenic marginal zone B-cell lymphoma    
14q22 del(14)(q22) Splenic marginal zone B-cell lymphoma    
14q22 del(14)(q22q32) Splenic marginal zone B-cell lymphoma    
14q32 add(14)(q32) Splenic marginal zone B-cell lymphoma    
14q32 del(14)(q22q32) Splenic marginal zone B-cell lymphoma    
15q22 del(15)(q22) Splenic marginal zone B-cell lymphoma    
17p11 add(17)(p11) Splenic marginal zone B-cell lymphoma    
17p11 del(17)(p11) Splenic marginal zone B-cell lymphoma    
17p11 der(8)t(8;17)(p12;p11) Splenic marginal zone B-cell lymphoma    
17p13 add(17)(p13) Splenic marginal zone B-cell lymphoma    
17q10 i(17)(q10) Splenic marginal zone B-cell lymphoma   10   
18q10 i(18)(q10) Splenic marginal zone B-cell lymphoma    
19q13 add(19)(q13) Splenic marginal zone B-cell lymphoma    
21p11 add(21)(p11) Splenic marginal zone B-cell lymphoma    

Numerical Chromosomal Trisomy Abnormalities

Abnormality Morphology Topography Cases Genes
+1 Splenic marginal zone B-cell lymphoma    
+3 Splenic marginal zone B-cell lymphoma   29   
+4 Splenic marginal zone B-cell lymphoma    
+5 Splenic marginal zone B-cell lymphoma    
+7 Splenic marginal zone B-cell lymphoma    
+8 Splenic marginal zone B-cell lymphoma    
+9 Splenic marginal zone B-cell lymphoma    
+10 Splenic marginal zone B-cell lymphoma    
+11 Splenic marginal zone B-cell lymphoma    
+12 Splenic marginal zone B-cell lymphoma   18   
+13 Splenic marginal zone B-cell lymphoma    
+18 Splenic marginal zone B-cell lymphoma   27   
+19 Splenic marginal zone B-cell lymphoma    
+22 Splenic marginal zone B-cell lymphoma    
+X Splenic marginal zone B-cell lymphoma   16   

Numerical Chromosomal Monosomy Abnormalities

Abnormality Morphology Topography Cases Genes
-1 Splenic marginal zone B-cell lymphoma    
-2 Splenic marginal zone B-cell lymphoma    
-4 Splenic marginal zone B-cell lymphoma    
-5 Splenic marginal zone B-cell lymphoma    
-6 Splenic marginal zone B-cell lymphoma    
-7 Splenic marginal zone B-cell lymphoma    
-8 Splenic marginal zone B-cell lymphoma    
-9 Splenic marginal zone B-cell lymphoma    
-10 Splenic marginal zone B-cell lymphoma    
-11 Splenic marginal zone B-cell lymphoma    
-12 Splenic marginal zone B-cell lymphoma    
-13 Splenic marginal zone B-cell lymphoma    
-14 Splenic marginal zone B-cell lymphoma    
-15 Splenic marginal zone B-cell lymphoma    
-16 Splenic marginal zone B-cell lymphoma    
-17 Splenic marginal zone B-cell lymphoma    
-18 Splenic marginal zone B-cell lymphoma    
-19 Splenic marginal zone B-cell lymphoma    
-20 Splenic marginal zone B-cell lymphoma    
-21 Splenic marginal zone B-cell lymphoma   12   
-22 Splenic marginal zone B-cell lymphoma    
-X Splenic marginal zone B-cell lymphoma    
-Y Splenic marginal zone B-cell lymphoma   11