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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
Aberration type:




Expand Topography List:

Expand Morphology List:

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[Full Text]

Balanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1q23 t(1;5)(q23;q33) Chronic myeloproliferative disorder, NOS    
1q25 t(1;8)(q25;p11) Chronic myeloproliferative disorder, NOS    
3p21 t(3;5)(p21;q31) Chronic myeloproliferative disorder, NOS    
3q21 inv(3)(q21q26) Chronic myeloproliferative disorder, NOS    
3q24 t(3;5)(q24;q33) Chronic myeloproliferative disorder, NOS    
3q26 inv(3)(q21q26) Chronic myeloproliferative disorder, NOS    
3q26 t(3;21)(q26;q22) Chronic myeloproliferative disorder, NOS    
4q12 t(4;22)(q12;q11) Chronic myeloproliferative disorder, NOS    
5q31 t(3;5)(p21;q31) Chronic myeloproliferative disorder, NOS    
5q33 t(1;5)(q23;q33) Chronic myeloproliferative disorder, NOS    
5q33 t(3;5)(q24;q33) Chronic myeloproliferative disorder, NOS    
5q33 t(5;12)(q33;p13) Chronic myeloproliferative disorder, NOS   ETV6+
5q33 t(5;12)(q33;q13) Chronic myeloproliferative disorder, NOS    
6q27 t(6;8)(q27;p11) Chronic myeloproliferative disorder, NOS   FGFR1OP/FGFR1
7p15 t(7;11)(p15;p15) Chronic myeloproliferative disorder, NOS    
8p11 t(1;8)(q25;p11) Chronic myeloproliferative disorder, NOS    
8p11 t(6;8)(q27;p11) Chronic myeloproliferative disorder, NOS   FGFR1OP/FGFR1
8p11 t(8;12)(p11;q15) Chronic myeloproliferative disorder, NOS   CPSF6/FGFR1,FGFR1+
8p11 t(8;13)(p11;q11) Chronic myeloproliferative disorder, NOS    
8p11 t(8;13)(p11;q12) Chronic myeloproliferative disorder, NOS   ZMYM2/FGFR1
8p11 t(8;22)(p11;q11) Chronic myeloproliferative disorder, NOS   BCR/FGFR1
8p11 t(8;9)(p11;q33) Chronic myeloproliferative disorder, NOS   CNTRL/FGFR1,FGFR1+
8p11 t(8;9)(p11;q34) Chronic myeloproliferative disorder, NOS    
8p22 t(8;9)(p22;p24) Chronic myeloproliferative disorder, NOS   PCM1/JAK2
9p24 t(8;9)(p22;p24) Chronic myeloproliferative disorder, NOS   PCM1/JAK2
9q33 t(8;9)(p11;q33) Chronic myeloproliferative disorder, NOS   CNTRL/FGFR1,FGFR1+
9q34 t(8;9)(p11;q34) Chronic myeloproliferative disorder, NOS    
9q34 t(9;12)(q34;p13) Chronic myeloproliferative disorder, NOS    
11p15 t(7;11)(p15;p15) Chronic myeloproliferative disorder, NOS    
12p13 t(5;12)(q33;p13) Chronic myeloproliferative disorder, NOS   ETV6+
12p13 t(9;12)(q34;p13) Chronic myeloproliferative disorder, NOS    
12q13 t(5;12)(q33;q13) Chronic myeloproliferative disorder, NOS    
12q15 t(8;12)(p11;q15) Chronic myeloproliferative disorder, NOS   CPSF6/FGFR1,FGFR1+
13q11 t(8;13)(p11;q11) Chronic myeloproliferative disorder, NOS    
13q12 t(8;13)(p11;q12) Chronic myeloproliferative disorder, NOS   ZMYM2/FGFR1
21q22 t(3;21)(q26;q22) Chronic myeloproliferative disorder, NOS    
22q11 t(4;22)(q12;q11) Chronic myeloproliferative disorder, NOS    
22q11 t(8;22)(p11;q11) Chronic myeloproliferative disorder, NOS   BCR/FGFR1

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p11 der(1)t(1;7)(p11;p11) Chronic myeloproliferative disorder, NOS    
1q10 der(1;7)(q10;p10) Chronic myeloproliferative disorder, NOS    
3q21 del(3)(q21) Chronic myeloproliferative disorder, NOS    
5q13 del(5)(q13q33) Chronic myeloproliferative disorder, NOS    
5q33 del(5)(q13q33) Chronic myeloproliferative disorder, NOS    
7p10 der(1;7)(q10;p10) Chronic myeloproliferative disorder, NOS    
7p11 der(1)t(1;7)(p11;p11) Chronic myeloproliferative disorder, NOS    
7q22 del(7)(q22q32) Chronic myeloproliferative disorder, NOS    
7q32 del(7)(q22q32) Chronic myeloproliferative disorder, NOS    
9p24 add(9)(p24) Chronic myeloproliferative disorder, NOS    
13q12 del(13)(q12q22) Chronic myeloproliferative disorder, NOS    
13q14 del(13)(q14q22) Chronic myeloproliferative disorder, NOS    
13q22 del(13)(q12q22) Chronic myeloproliferative disorder, NOS    
13q22 del(13)(q14q22) Chronic myeloproliferative disorder, NOS    
14q10 i(14)(q10) Chronic myeloproliferative disorder, NOS    
17q10 i(17)(q10) Chronic myeloproliferative disorder, NOS   22   
20q11 del(20)(q11) Chronic myeloproliferative disorder, NOS    
20q11 del(20)(q11q13) Chronic myeloproliferative disorder, NOS    
20q12 del(20)(q12) Chronic myeloproliferative disorder, NOS    
20q13 del(20)(q11q13) Chronic myeloproliferative disorder, NOS    

Numerical Chromosomal Trisomy Abnormalities

Abnormality Morphology Topography Cases Genes
+1 Chronic myeloproliferative disorder, NOS    
+6 Chronic myeloproliferative disorder, NOS    
+8 Chronic myeloproliferative disorder, NOS   43   
+9 Chronic myeloproliferative disorder, NOS    
+11 Chronic myeloproliferative disorder, NOS    
+12 Chronic myeloproliferative disorder, NOS    
+13 Chronic myeloproliferative disorder, NOS    
+14 Chronic myeloproliferative disorder, NOS    
+15 Chronic myeloproliferative disorder, NOS    
+19 Chronic myeloproliferative disorder, NOS    
+21 Chronic myeloproliferative disorder, NOS   20   
+X Chronic myeloproliferative disorder, NOS    

Numerical Chromosomal Monosomy Abnormalities

Abnormality Morphology Topography Cases Genes
-4 Chronic myeloproliferative disorder, NOS    
-5 Chronic myeloproliferative disorder, NOS    
-6 Chronic myeloproliferative disorder, NOS    
-7 Chronic myeloproliferative disorder, NOS   18   
-8 Chronic myeloproliferative disorder, NOS    
-10 Chronic myeloproliferative disorder, NOS    
-12 Chronic myeloproliferative disorder, NOS    
-16 Chronic myeloproliferative disorder, NOS    
-17 Chronic myeloproliferative disorder, NOS    
-18 Chronic myeloproliferative disorder, NOS    
-22 Chronic myeloproliferative disorder, NOS    
-Y Chronic myeloproliferative disorder, NOS   25