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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
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[Full Text]

Balanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p36 t(1;3)(p36;q21) Acute erythroleukemia (FAB type M6)   RPN1/PRDM16
3q21 inv(3)(q21q26) Acute erythroleukemia (FAB type M6)    
3q21 t(1;3)(p36;q21) Acute erythroleukemia (FAB type M6)   RPN1/PRDM16
3q21 t(3;3)(q21;q26) Acute erythroleukemia (FAB type M6)    
3q21 t(3;5)(q21;q31) Acute erythroleukemia (FAB type M6)    
3q25 t(3;5)(q25;q34) Acute erythroleukemia (FAB type M6)    
3q25 t(3;5)(q25;q35) Acute erythroleukemia (FAB type M6)   NPM1/MLF1
3q26 inv(3)(q21q26) Acute erythroleukemia (FAB type M6)    
3q26 t(3;3)(q21;q26) Acute erythroleukemia (FAB type M6)    
5q31 t(3;5)(q21;q31) Acute erythroleukemia (FAB type M6)    
5q34 t(3;5)(q25;q34) Acute erythroleukemia (FAB type M6)    
5q35 t(3;5)(q25;q35) Acute erythroleukemia (FAB type M6)   NPM1/MLF1
6p23 inv(6)(p23q12) Acute erythroleukemia (FAB type M6)    
6q12 inv(6)(p23q12) Acute erythroleukemia (FAB type M6)    
7q11 t(7;11)(q11;p15) Acute erythroleukemia (FAB type M6)    
8q24 t(8;12)(q24;q24) Acute erythroleukemia (FAB type M6)    
9q34 t(9;22)(q34;q11) Acute erythroleukemia (FAB type M6)   BCR/ABL1
11p15 t(7;11)(q11;p15) Acute erythroleukemia (FAB type M6)    
11q23 t(11;19)(q23;p13) Acute erythroleukemia (FAB type M6)   H2AFX/WDR18,WDR18/H2AFX
12q24 t(8;12)(q24;q24) Acute erythroleukemia (FAB type M6)    
16p13 inv(16)(p13q22) Acute erythroleukemia (FAB type M6)    
16q22 inv(16)(p13q22) Acute erythroleukemia (FAB type M6)    
16q22 t(16;17)(q22;q11) Acute erythroleukemia (FAB type M6)    
17q11 t(16;17)(q22;q11) Acute erythroleukemia (FAB type M6)    
19p13 t(11;19)(q23;p13) Acute erythroleukemia (FAB type M6)   H2AFX/WDR18,WDR18/H2AFX
22q11 t(9;22)(q34;q11) Acute erythroleukemia (FAB type M6)   BCR/ABL1
Xp21 inv(X)(p21q12) Acute erythroleukemia (FAB type M6)    
Xq12 inv(X)(p21q12) Acute erythroleukemia (FAB type M6)    

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p12 add(1)(p12) Acute erythroleukemia (FAB type M6)    
1p13 del(1)(p13) Acute erythroleukemia (FAB type M6)    
1p22 del(1)(p22) Acute erythroleukemia (FAB type M6)    
1p32 add(1)(p32) Acute erythroleukemia (FAB type M6)    
1p36 add(1)(p36) Acute erythroleukemia (FAB type M6)    
1q10 der(1;7)(q10;p10) Acute erythroleukemia (FAB type M6)    
1q10 der(1;9)(q10;p10) Acute erythroleukemia (FAB type M6)    
1q11 del(1)(q11) Acute erythroleukemia (FAB type M6)    
1q11 der(19)t(1;19)(q11;p13) Acute erythroleukemia (FAB type M6)    
1q21 add(1)(q21) Acute erythroleukemia (FAB type M6)    
1q21 del(1)(q21) Acute erythroleukemia (FAB type M6)    
1q32 add(1)(q32) Acute erythroleukemia (FAB type M6)    
2p23 add(2)(p23) Acute erythroleukemia (FAB type M6)    
2q37 add(2)(q37) Acute erythroleukemia (FAB type M6)    
3p11 add(3)(p11) Acute erythroleukemia (FAB type M6)    
3p11 del(3)(p11) Acute erythroleukemia (FAB type M6)    
3p13 add(3)(p13) Acute erythroleukemia (FAB type M6)    
3p14 del(3)(p14p23) Acute erythroleukemia (FAB type M6)    
3p21 del(3)(p21) Acute erythroleukemia (FAB type M6)    
3p23 del(3)(p14p23) Acute erythroleukemia (FAB type M6)    
3p25 add(3)(p25) Acute erythroleukemia (FAB type M6)    
3q10 i(3)(q10) Acute erythroleukemia (FAB type M6)    
3q11 add(3)(q11) Acute erythroleukemia (FAB type M6)    
3q12 add(3)(q12) Acute erythroleukemia (FAB type M6)    
3q21 del(3)(q21) Acute erythroleukemia (FAB type M6)    
4q21 add(4)(q21) Acute erythroleukemia (FAB type M6)    
4q21 del(4)(q21) Acute erythroleukemia (FAB type M6)    
4q31 add(4)(q31) Acute erythroleukemia (FAB type M6)    
5p10 der(5;17)(p10;q10) Acute erythroleukemia (FAB type M6)    
5q11 add(5)(q11) Acute erythroleukemia (FAB type M6)    
5q11 del(5)(q11) Acute erythroleukemia (FAB type M6)    
5q11 del(5)(q11q35) Acute erythroleukemia (FAB type M6)    
5q12 del(5)(q12q32) Acute erythroleukemia (FAB type M6)    
5q12 del(5)(q12q33) Acute erythroleukemia (FAB type M6)    
5q12 del(5)(q12q34) Acute erythroleukemia (FAB type M6)    
5q13 add(5)(q13) Acute erythroleukemia (FAB type M6)    
5q13 del(5)(q13) Acute erythroleukemia (FAB type M6)    
5q13 del(5)(q13q31) Acute erythroleukemia (FAB type M6)    
5q13 del(5)(q13q32) Acute erythroleukemia (FAB type M6)    
5q13 del(5)(q13q33) Acute erythroleukemia (FAB type M6)   27   
5q13 del(5)(q13q34) Acute erythroleukemia (FAB type M6)    
5q13 del(5)(q13q35) Acute erythroleukemia (FAB type M6)    
5q13 dic(5;17)(q13;p11) Acute erythroleukemia (FAB type M6)    
5q14 del(5)(q14q31) Acute erythroleukemia (FAB type M6)    
5q14 del(5)(q14q32) Acute erythroleukemia (FAB type M6)    
5q14 del(5)(q14q33) Acute erythroleukemia (FAB type M6)    
5q14 del(5)(q14q34) Acute erythroleukemia (FAB type M6)    
5q15 add(5)(q15) Acute erythroleukemia (FAB type M6)    
5q15 del(5)(q15) Acute erythroleukemia (FAB type M6)    
5q15 del(5)(q15q33) Acute erythroleukemia (FAB type M6)    
5q15 del(5)(q15q34) Acute erythroleukemia (FAB type M6)    
5q21 del(5)(q21q23) Acute erythroleukemia (FAB type M6)    
5q22 del(5)(q22q31) Acute erythroleukemia (FAB type M6)    
5q22 del(5)(q22q33) Acute erythroleukemia (FAB type M6)    
5q23 del(5)(q21q23) Acute erythroleukemia (FAB type M6)    
5q23 del(5)(q23q34) Acute erythroleukemia (FAB type M6)    
5q31 add(5)(q31) Acute erythroleukemia (FAB type M6)    
5q31 del(5)(q13q31) Acute erythroleukemia (FAB type M6)    
5q31 del(5)(q14q31) Acute erythroleukemia (FAB type M6)    
5q31 del(5)(q22q31) Acute erythroleukemia (FAB type M6)    
5q31 del(5)(q31q35) Acute erythroleukemia (FAB type M6)    
5q32 del(5)(q12q32) Acute erythroleukemia (FAB type M6)    
5q32 del(5)(q13q32) Acute erythroleukemia (FAB type M6)    
5q32 del(5)(q14q32) Acute erythroleukemia (FAB type M6)    
5q33 del(5)(q12q33) Acute erythroleukemia (FAB type M6)    
5q33 del(5)(q13q33) Acute erythroleukemia (FAB type M6)   27   
5q33 del(5)(q14q33) Acute erythroleukemia (FAB type M6)    
5q33 del(5)(q15q33) Acute erythroleukemia (FAB type M6)    
5q33 del(5)(q22q33) Acute erythroleukemia (FAB type M6)    
5q34 del(5)(q12q34) Acute erythroleukemia (FAB type M6)    
5q34 del(5)(q13q34) Acute erythroleukemia (FAB type M6)    
5q34 del(5)(q14q34) Acute erythroleukemia (FAB type M6)    
5q34 del(5)(q15q34) Acute erythroleukemia (FAB type M6)    
5q34 del(5)(q23q34) Acute erythroleukemia (FAB type M6)    
5q35 del(5)(q11q35) Acute erythroleukemia (FAB type M6)    
5q35 del(5)(q13q35) Acute erythroleukemia (FAB type M6)    
5q35 del(5)(q31q35) Acute erythroleukemia (FAB type M6)    
6p11 add(6)(p11) Acute erythroleukemia (FAB type M6)    
6p21 add(6)(p21) Acute erythroleukemia (FAB type M6)    
6p25 add(6)(p25) Acute erythroleukemia (FAB type M6)    
6q21 del(6)(q21) Acute erythroleukemia (FAB type M6)    
6q22 del(6)(q22) Acute erythroleukemia (FAB type M6)    
6q23 add(6)(q23) Acute erythroleukemia (FAB type M6)    
6q23 del(6)(q23) Acute erythroleukemia (FAB type M6)    
7p10 der(1;7)(q10;p10) Acute erythroleukemia (FAB type M6)    
7p10 i(7)(p10) Acute erythroleukemia (FAB type M6)    
7p11 del(7)(p11) Acute erythroleukemia (FAB type M6)    
7p12 del(7)(p12p14) Acute erythroleukemia (FAB type M6)    
7p13 add(7)(p13) Acute erythroleukemia (FAB type M6)    
7p14 del(7)(p12p14) Acute erythroleukemia (FAB type M6)    
7q10 i(7)(q10) Acute erythroleukemia (FAB type M6)    
7q11 add(7)(q11) Acute erythroleukemia (FAB type M6)    
7q11 del(7)(q11) Acute erythroleukemia (FAB type M6)    
7q11 del(7)(q11q22) Acute erythroleukemia (FAB type M6)    
7q11 der(22)t(7;22)(q11;p11) Acute erythroleukemia (FAB type M6)    
7q21 add(7)(q21) Acute erythroleukemia (FAB type M6)    
7q21 del(7)(q21) Acute erythroleukemia (FAB type M6)    
7q21 del(7)(q21q31) Acute erythroleukemia (FAB type M6)    
7q21 del(7)(q21q35) Acute erythroleukemia (FAB type M6)    
7q22 add(7)(q22) Acute erythroleukemia (FAB type M6)    

Band Abnormality Morphology Topography Cases Genes
7q22 del(7)(q11q22) Acute erythroleukemia (FAB type M6)    
7q22 del(7)(q22) Acute erythroleukemia (FAB type M6)   10   
7q31 del(7)(q21q31) Acute erythroleukemia (FAB type M6)    
7q31 del(7)(q31) Acute erythroleukemia (FAB type M6)    
7q31 del(7)(q31q33) Acute erythroleukemia (FAB type M6)    
7q31 del(7)(q31q34) Acute erythroleukemia (FAB type M6)    
7q32 del(7)(q32) Acute erythroleukemia (FAB type M6)    
7q33 del(7)(q31q33) Acute erythroleukemia (FAB type M6)    
7q34 del(7)(q31q34) Acute erythroleukemia (FAB type M6)    
7q35 del(7)(q21q35) Acute erythroleukemia (FAB type M6)    
8q24 add(8)(q24) Acute erythroleukemia (FAB type M6)    
9p10 der(1;9)(q10;p10) Acute erythroleukemia (FAB type M6)    
9p24 add(9)(p24) Acute erythroleukemia (FAB type M6)    
9q12 del(9)(q12q22) Acute erythroleukemia (FAB type M6)    
9q13 del(9)(q13q31) Acute erythroleukemia (FAB type M6)    
9q22 del(9)(q12q22) Acute erythroleukemia (FAB type M6)    
9q31 del(9)(q13q31) Acute erythroleukemia (FAB type M6)    
9q34 add(9)(q34) Acute erythroleukemia (FAB type M6)    
10q11 del(10)(q11) Acute erythroleukemia (FAB type M6)    
10q22 add(10)(q22) Acute erythroleukemia (FAB type M6)    
10q24 del(10)(q24) Acute erythroleukemia (FAB type M6)    
10q26 add(10)(q26) Acute erythroleukemia (FAB type M6)    
11p11 add(11)(p11) Acute erythroleukemia (FAB type M6)    
11p11 del(11)(p11) Acute erythroleukemia (FAB type M6)    
11p15 add(11)(p15) Acute erythroleukemia (FAB type M6)    
11q10 i(11)(q10) Acute erythroleukemia (FAB type M6)    
11q21 add(11)(q21) Acute erythroleukemia (FAB type M6)    
11q21 del(11)(q21) Acute erythroleukemia (FAB type M6)    
11q23 add(11)(q23) Acute erythroleukemia (FAB type M6)    
11q23 del(11)(q23) Acute erythroleukemia (FAB type M6)    
12p11 add(12)(p11) Acute erythroleukemia (FAB type M6)    
12p11 del(12)(p11) Acute erythroleukemia (FAB type M6)    
12p11 del(12)(p11p13) Acute erythroleukemia (FAB type M6)    
12p11 der(12)t(12;13)(p11;q11) Acute erythroleukemia (FAB type M6)    
12p12 add(12)(p12) Acute erythroleukemia (FAB type M6)    
12p12 del(12)(p12) Acute erythroleukemia (FAB type M6)    
12p12 del(12)(p12p13) Acute erythroleukemia (FAB type M6)    
12p13 add(12)(p13) Acute erythroleukemia (FAB type M6)    
12p13 del(12)(p11p13) Acute erythroleukemia (FAB type M6)    
12p13 del(12)(p12p13) Acute erythroleukemia (FAB type M6)    
12p13 del(12)(p13) Acute erythroleukemia (FAB type M6)    
12q23 del(12)(q23) Acute erythroleukemia (FAB type M6)    
12q24 add(12)(q24) Acute erythroleukemia (FAB type M6)    
13p11 add(13)(p11) Acute erythroleukemia (FAB type M6)    
13q11 del(13)(q11q14) Acute erythroleukemia (FAB type M6)    
13q11 der(12)t(12;13)(p11;q11) Acute erythroleukemia (FAB type M6)    
13q12 del(13)(q12q14) Acute erythroleukemia (FAB type M6)    
13q14 del(13)(q11q14) Acute erythroleukemia (FAB type M6)    
13q14 del(13)(q12q14) Acute erythroleukemia (FAB type M6)    
13q14 del(13)(q14q22) Acute erythroleukemia (FAB type M6)    
13q22 del(13)(q14q22) Acute erythroleukemia (FAB type M6)    
13q34 add(13)(q34) Acute erythroleukemia (FAB type M6)    
14p11 add(14)(p11) Acute erythroleukemia (FAB type M6)    
14q10 der(14;15)(q10;q10) Acute erythroleukemia (FAB type M6)    
14q10 der(14;21)(q10;q10) Acute erythroleukemia (FAB type M6)    
14q24 add(14)(q24) Acute erythroleukemia (FAB type M6)    
15p11 add(15)(p11) Acute erythroleukemia (FAB type M6)    
15q10 der(14;15)(q10;q10) Acute erythroleukemia (FAB type M6)    
16p11 add(16)(p11) Acute erythroleukemia (FAB type M6)    
16p12 add(16)(p12) Acute erythroleukemia (FAB type M6)    
16p13 add(16)(p13) Acute erythroleukemia (FAB type M6)    
16p13 del(16)(p13) Acute erythroleukemia (FAB type M6)    
16q13 add(16)(q13) Acute erythroleukemia (FAB type M6)    
16q22 add(16)(q22) Acute erythroleukemia (FAB type M6)    
16q22 del(16)(q22) Acute erythroleukemia (FAB type M6)    
16q24 add(16)(q24) Acute erythroleukemia (FAB type M6)    
17p11 add(17)(p11) Acute erythroleukemia (FAB type M6)    
17p11 del(17)(p11) Acute erythroleukemia (FAB type M6)    
17p11 dic(5;17)(q13;p11) Acute erythroleukemia (FAB type M6)    
17p13 add(17)(p13) Acute erythroleukemia (FAB type M6)    
17q10 der(5;17)(p10;q10) Acute erythroleukemia (FAB type M6)    
17q10 i(17)(q10) Acute erythroleukemia (FAB type M6)    
17q25 add(17)(q25) Acute erythroleukemia (FAB type M6)    
18p11 add(18)(p11) Acute erythroleukemia (FAB type M6)    
18q21 del(18)(q21) Acute erythroleukemia (FAB type M6)    
18q23 add(18)(q23) Acute erythroleukemia (FAB type M6)    
19p13 add(19)(p13) Acute erythroleukemia (FAB type M6)   13   
19p13 der(19)t(1;19)(q11;p13) Acute erythroleukemia (FAB type M6)    
19q13 add(19)(q13) Acute erythroleukemia (FAB type M6)    
20p11 del(20)(p11) Acute erythroleukemia (FAB type M6)    
20p13 add(20)(p13) Acute erythroleukemia (FAB type M6)    
20q11 add(20)(q11) Acute erythroleukemia (FAB type M6)    
20q11 del(20)(q11) Acute erythroleukemia (FAB type M6)   11   
20q11 del(20)(q11q13) Acute erythroleukemia (FAB type M6)    
20q12 del(20)(q12) Acute erythroleukemia (FAB type M6)    
20q13 del(20)(q11q13) Acute erythroleukemia (FAB type M6)    
20q13 del(20)(q13) Acute erythroleukemia (FAB type M6)    
21p11 add(21)(p11) Acute erythroleukemia (FAB type M6)    
21q10 der(14;21)(q10;q10) Acute erythroleukemia (FAB type M6)    
21q10 i(21)(q10) Acute erythroleukemia (FAB type M6)    
21q22 add(21)(q22) Acute erythroleukemia (FAB type M6)    
21q22 dup(21)(q22q22) Acute erythroleukemia (FAB type M6)    
21q22 dup(21)(q22q22) Acute erythroleukemia (FAB type M6)    
22p11 add(22)(p11) Acute erythroleukemia (FAB type M6)    
22p11 der(22)t(7;22)(q11;p11) Acute erythroleukemia (FAB type M6)    
22p11 idic(22)(p11) Acute erythroleukemia (FAB type M6)    
22q10 i(22)(q10) Acute erythroleukemia (FAB type M6)    
22q11 del(22)(q11) Acute erythroleukemia (FAB type M6)    
22q13 add(22)(q13) Acute erythroleukemia (FAB type M6)    
Xp22 add(X)(p22) Acute erythroleukemia (FAB type M6)    

Numerical Chromosomal Trisomy Abnormalities

Abnormality Morphology Topography Cases Genes
+1 Acute erythroleukemia (FAB type M6)   34   
+2 Acute erythroleukemia (FAB type M6)   19   
+3 Acute erythroleukemia (FAB type M6)    
+4 Acute erythroleukemia (FAB type M6)   12   
+5 Acute erythroleukemia (FAB type M6)    
+6 Acute erythroleukemia (FAB type M6)   42   
+7 Acute erythroleukemia (FAB type M6)   11   
+8 Acute erythroleukemia (FAB type M6)   138   
+9 Acute erythroleukemia (FAB type M6)   20   
+10 Acute erythroleukemia (FAB type M6)   21   
+11 Acute erythroleukemia (FAB type M6)   27   
+12 Acute erythroleukemia (FAB type M6)    
+13 Acute erythroleukemia (FAB type M6)   17   
+14 Acute erythroleukemia (FAB type M6)   17   
+15 Acute erythroleukemia (FAB type M6)   18   
+16 Acute erythroleukemia (FAB type M6)    
+17 Acute erythroleukemia (FAB type M6)    
+18 Acute erythroleukemia (FAB type M6)   11   
+19 Acute erythroleukemia (FAB type M6)   31   
+20 Acute erythroleukemia (FAB type M6)   18   
+21 Acute erythroleukemia (FAB type M6)   69   
+22 Acute erythroleukemia (FAB type M6)   33   
+X Acute erythroleukemia (FAB type M6)   13   
+Y Acute erythroleukemia (FAB type M6)   12   

Numerical Chromosomal Monosomy Abnormalities

Abnormality Morphology Topography Cases Genes
-1 Acute erythroleukemia (FAB type M6)   11   
-2 Acute erythroleukemia (FAB type M6)   14   
-3 Acute erythroleukemia (FAB type M6)   39   
-4 Acute erythroleukemia (FAB type M6)   39   
-5 Acute erythroleukemia (FAB type M6)   118   
-6 Acute erythroleukemia (FAB type M6)   24   
-7 Acute erythroleukemia (FAB type M6)   188   
-8 Acute erythroleukemia (FAB type M6)   21   
-9 Acute erythroleukemia (FAB type M6)   42   
-10 Acute erythroleukemia (FAB type M6)   30   
-11 Acute erythroleukemia (FAB type M6)   30   
-12 Acute erythroleukemia (FAB type M6)   45   
-13 Acute erythroleukemia (FAB type M6)   55   
-14 Acute erythroleukemia (FAB type M6)   34   
-15 Acute erythroleukemia (FAB type M6)   49   
-16 Acute erythroleukemia (FAB type M6)   64   
-17 Acute erythroleukemia (FAB type M6)   111   
-18 Acute erythroleukemia (FAB type M6)   89   
-19 Acute erythroleukemia (FAB type M6)   52   
-20 Acute erythroleukemia (FAB type M6)   69   
-21 Acute erythroleukemia (FAB type M6)   56   
-22 Acute erythroleukemia (FAB type M6)   39   
-X Acute erythroleukemia (FAB type M6)   24   
-Y Acute erythroleukemia (FAB type M6)   44