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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

The Recurrent Chromosome Aberrations in Cancer Database Searcher
  • Brief instructions for searching the database:
    • You must choose one or both of the following two fields: Structural Aberrations and Numerical Aberrations.
    • If you choose Structural Aberrations, you must select at least one of the following fields: Breakpoint, Topography, Morphology, or Gene.
    • If you choose Numerical Aberrations, you must select at least one of the following fields: Chromosome, Topography, Morphology.
    • You may select only one item in each pulldown menu
    • Press Retrieve.
  • A successful search returns a table, with the following headings and entries:
    • Breakpoint, with each entry linked to the OMIM Gene Map (this column is returned only for structural aberrations)
    • Abnormality
    • Morphology, with each entry linked to a similar table that describes all abnormalities with this morphology.
    • Topography, with each entry linked to a similar table that describes all abnormalities at this topography
    • Number of cases, hyperlinked to the list of applicable cases
    • Genes

Aberration type:
Aberration type:




Expand Topography List:

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[Full Text]

Balanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
3q21 t(3;5)(q21;q31) Adenocarcinoma Stomach  
5q31 t(3;5)(q21;q31) Adenocarcinoma Stomach  
8q24 t(8;14)(q24;q32) Extranodal marginal zone B-cell lymphoma Stomach  
11q21 t(11;18)(q21;q21) Extranodal marginal zone B-cell lymphoma Stomach 10  MALT1+
14q32 t(8;14)(q24;q32) Extranodal marginal zone B-cell lymphoma Stomach  
18q21 t(11;18)(q21;q21) Extranodal marginal zone B-cell lymphoma Stomach 10  MALT1+

Unbalanced Chromosomal Abnormalities

Band Abnormality Morphology Topography Cases Genes
1p11 del(1)(p11) Gastrointestinal stromal tumor Stomach  
1p13 add(1)(p13) Adenocarcinoma Stomach  
1p22 del(1)(p22) Adenocarcinoma Stomach  
1p36 add(1)(p36) Adenocarcinoma Stomach  
1q10 i(1)(q10) Adenocarcinoma Stomach  
1q41 del(1)(q41) Adenocarcinoma Stomach  
2q10 i(2)(q10) Adenocarcinoma Stomach  
2q33 del(2)(q33) Adenocarcinoma Stomach  
3p11 add(3)(p11) Adenocarcinoma Stomach  
3p11 del(3)(p11) Adenocarcinoma Stomach  
3p13 del(3)(p13) Adenocarcinoma Stomach  
3p21 add(3)(p21) Adenocarcinoma Stomach  
3p21 del(3)(p21) Adenocarcinoma Stomach  
3p26 add(3)(p26) Adenocarcinoma Stomach  
3q11 del(3)(q11) Adenocarcinoma Stomach  
3q12 del(3)(q12) Adenocarcinoma Stomach  
3q13 add(3)(q13) Adenocarcinoma Stomach  
3q13 del(3)(q13) Adenocarcinoma Stomach  
3q21 del(3)(q21) Adenocarcinoma Stomach  
5p10 i(5)(p10) Adenocarcinoma Stomach  
6q15 del(6)(q15) Adenocarcinoma Stomach  
6q21 del(6)(q21) Adenocarcinoma Stomach  
6q22 del(6)(q22) Adenocarcinoma Stomach  
6q27 add(6)(q27) Adenocarcinoma Stomach  
7p21 add(7)(p21) Adenocarcinoma Stomach  
7p22 add(7)(p22) Adenocarcinoma Stomach  
7q21 del(7)(q21) Adenocarcinoma Stomach  
7q22 add(7)(q22) Adenocarcinoma Stomach  
7q22 del(7)(q22) Adenocarcinoma Stomach  
7q22 del(7)(q22) Extranodal marginal zone B-cell lymphoma Stomach  
7q31 del(7)(q31) Adenocarcinoma Stomach  
7q32 add(7)(q32) Adenocarcinoma Stomach  
7q32 del(7)(q32) Adenocarcinoma Stomach  
7q33 add(7)(q33) Adenocarcinoma Stomach  
8q10 i(8)(q10) Adenocarcinoma Stomach 11   
9p24 add(9)(p24) Adenocarcinoma Stomach  
9q10 i(9)(q10) Adenocarcinoma Stomach  
10q23 del(10)(q23) Adenocarcinoma Stomach  
10q24 del(10)(q24) Adenocarcinoma Stomach  
10q26 add(10)(q26) Adenocarcinoma Stomach  
11p11 add(11)(p11) Adenocarcinoma Stomach  
11p13 add(11)(p13) Adenocarcinoma Stomach  
12p10 i(12)(p10) Adenocarcinoma Stomach  
12p11 add(12)(p11) Adenocarcinoma Stomach  
12p12 del(12)(p12) Adenocarcinoma Stomach  
12p12 der(12)add(12)(p12)del(12)(q24) Adenocarcinoma Stomach  
12p13 add(12)(p13) Adenocarcinoma Stomach  
12q24 del(12)(q24) Adenocarcinoma Stomach  
12q24 der(12)add(12)(p12)del(12)(q24) Adenocarcinoma Stomach  
13p11 add(13)(p11) Adenocarcinoma Stomach  
13q10 der(13;14)(q10;q10) Adenocarcinoma Stomach  
13q10 i(13)(q10) Adenocarcinoma Stomach  
14p11 add(14)(p11) Adenocarcinoma Stomach  
14q10 der(13;14)(q10;q10) Adenocarcinoma Stomach  
15p11 add(15)(p11) Adenocarcinoma Stomach  
17p11 add(17)(p11) Adenocarcinoma Stomach  
17p12 del(17)(p12) Adenocarcinoma Stomach  
17p13 add(17)(p13) Adenocarcinoma Stomach  
17q10 i(17)(q10) Adenocarcinoma Stomach  
18p11 add(18)(p11) Extranodal marginal zone B-cell lymphoma Stomach  
18q21 del(18)(q21) Adenocarcinoma Stomach  
19q13 add(19)(q13) Leiomyosarcoma Stomach  
21p11 add(21)(p11) Adenocarcinoma Stomach  
22p11 add(22)(p11) Adenocarcinoma Stomach  
22q13 del(22)(q13) Adenocarcinoma Stomach  

Numerical Chromosomal Trisomy Abnormalities

Abnormality Morphology Topography Cases Genes
+1 Adenocarcinoma Stomach  
+2 Adenocarcinoma Stomach  
+2 Gastrointestinal stromal tumor Stomach  
+3 Adenocarcinoma Stomach  
+3 Extranodal marginal zone B-cell lymphoma Stomach  
+4 Adenocarcinoma Stomach  
+4 Gastrointestinal stromal tumor Stomach  
+5 Adenocarcinoma Stomach  
+5 Extranodal marginal zone B-cell lymphoma Stomach  
+5 Gastrointestinal stromal tumor Stomach  
+5 Leiomyosarcoma Stomach  
+6 Adenocarcinoma Stomach  
+6 Gastrointestinal stromal tumor Stomach  
+7 Adenocarcinoma Stomach 20   
+7 Gastrointestinal stromal tumor Stomach  
+8 Adenocarcinoma Stomach 29   
+9 Adenocarcinoma Stomach 12   
+10 Adenocarcinoma Stomach  
+11 Adenocarcinoma Stomach  
+12 Adenocarcinoma Stomach 11   
+12 Extranodal marginal zone B-cell lymphoma Stomach  
+12 Gastrointestinal stromal tumor Stomach  
+12 Undifferentiated carcinoma Stomach  
+13 Adenocarcinoma Stomach 13   
+14 Adenocarcinoma Stomach  
+15 Adenocarcinoma Stomach  
+16 Adenocarcinoma Stomach 10   
+17 Adenocarcinoma Stomach  
+17 Gastrointestinal stromal tumor Stomach  
+18 Adenocarcinoma Stomach  
+18 Extranodal marginal zone B-cell lymphoma Stomach  
+19 Adenocarcinoma Stomach  
+19 Gastrointestinal stromal tumor Stomach  
+19 Leiomyosarcoma Stomach  
+20 Adenocarcinoma Stomach 26   
+20 Gastrointestinal stromal tumor Stomach  
+20 Leiomyosarcoma Stomach  
+21 Adenocarcinoma Stomach  
+22 Adenocarcinoma Stomach  
+X Adenocarcinoma Stomach 11   
+Y Adenocarcinoma Stomach  

Numerical Chromosomal Monosomy Abnormalities

Abnormality Morphology Topography Cases Genes
-1 Adenocarcinoma Stomach 18   
-1 Gastrointestinal stromal tumor Stomach  
-1 Leiomyosarcoma Stomach  
-2 Adenocarcinoma Stomach 13   
-2 Leiomyosarcoma Stomach  
-3 Adenocarcinoma Stomach 14   
-3 Gastrointestinal stromal tumor Stomach  
-3 Leiomyosarcoma Stomach  
-4 Adenocarcinoma Stomach 21   
-4 Leiomyosarcoma Stomach  
-5 Adenocarcinoma Stomach 18   
-5 Leiomyosarcoma Stomach  
-6 Adenocarcinoma Stomach 11   
-6 Extranodal marginal zone B-cell lymphoma Stomach  
-7 Adenocarcinoma Stomach  
-7 Leiomyosarcoma Stomach  
-8 Adenocarcinoma Stomach 15   
-8 Leiomyosarcoma Stomach  
-8 Undifferentiated carcinoma Stomach  
-9 Adenocarcinoma Stomach 28   
-9 Extranodal marginal zone B-cell lymphoma Stomach  
-9 Gastrointestinal stromal tumor Stomach  
-9 Leiomyosarcoma Stomach  
-10 Adenocarcinoma Stomach 23   
-10 Gastrointestinal stromal tumor Stomach  
-10 Leiomyosarcoma Stomach  
-11 Adenocarcinoma Stomach  
-11 Leiomyosarcoma Stomach  
-12 Adenocarcinoma Stomach 16   
-12 Leiomyosarcoma Stomach  
-13 Adenocarcinoma Stomach 17   
-13 Leiomyosarcoma Stomach  
-14 Adenocarcinoma Stomach 25   
-14 Gastrointestinal stromal tumor Stomach 16   
-14 Leiomyosarcoma Stomach  
-15 Adenocarcinoma Stomach 21   
-15 Gastrointestinal stromal tumor Stomach  
-15 Leiomyosarcoma Stomach  
-16 Adenocarcinoma Stomach 25   
-16 Leiomyosarcoma Stomach  
-17 Adenocarcinoma Stomach 27   
-17 Gastrointestinal stromal tumor Stomach  
-18 Adenocarcinoma Stomach 36   
-18 Leiomyosarcoma Stomach  
-19 Adenocarcinoma Stomach 14   
-19 Gastrointestinal stromal tumor Stomach  
-19 Leiomyosarcoma Stomach  
-20 Adenocarcinoma Stomach 16   
-21 Adenocarcinoma Stomach 29   
-21 Gastrointestinal stromal tumor Stomach  
-21 Leiomyosarcoma Stomach  
-22 Adenocarcinoma Stomach 30   
-22 Gastrointestinal stromal tumor Stomach 10   
-22 Leiomyosarcoma Stomach  
-22 Undifferentiated carcinoma Stomach  
-X Adenocarcinoma Stomach 25   
-X Extranodal marginal zone B-cell lymphoma Stomach  
-X Gastrointestinal stromal tumor Stomach  
-X Leiomyosarcoma Stomach  
-Y Adenocarcinoma Stomach 32   
-Y Gastrointestinal stromal tumor Stomach  
-Y Leiomyosarcoma Stomach  
-Y Undifferentiated carcinoma Stomach