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SAGE Genie
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All Tags in Gene


Search query: UCHL1 (Ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)), Gene Info

List of Tags for Gene

TagFreq.DatabaseRankVirtual Tag Classification¹AccessionLT
Viewer
Digital NorthernSAGE Anatomic Viewer²
CAGTCTAAAA 1472 refseq_p5s 95.4% reliable 3' end NM_004181 LTV DN
CAGTCTAAAA 1472 mgc_p5s 94.1% reliable 3' end BC000332 LTV DN
CAGTCTAAAA 1472 mgc_p5s 94.1% reliable 3' end BC005117 LTV DN
CAGTCTAAAA 1472 fl_p5s 92.8% reliable 3' end BC006305 LTV DN
CAGTCTAAAA 1472 fl_sr 89.1% reliable 3' end AK054579 LTV DN
CAGTCTAAAA 1472 fl_sr 89.1% reliable 3' end AK055249 LTV DN
CAGTCTAAAA 1472 fl_sr 89.1% reliable 3' end X04741 LTV DN
AAAATATATA 17 mgc_p5s 76.6% internal tag BC000332 LTV DN
AAAATATATA 17 mgc_p5s 76.6% internal tag BC005117 LTV DN
AAAATATATA 17 refseq_p5s 75.4% internal tag NM_004181 LTV DN
AAAATATATA 17 fl_p5s 73.8% internal tag BC006305 LTV DN
AAGCAGACCA* 23 refseq_apa 69.6% shorter alternative transcript NM_004181 LTV DN
ATGCCGTGGC 26 refseq_apa 69.6% shorter alternative transcript NM_004181 LTV DN
GCGCCAGTTC 52 refseq_apa 69.6% shorter alternative transcript NM_004181 LTV DN
AAGCAGACCA* 23 mgc_apa 69.1% shorter alternative transcript BC000332 LTV DN
AAGCAGACCA* 23 mgc_apa 69.1% shorter alternative transcript BC005117 LTV DN
ATGCCGTGGC 26 mgc_apa 69.1% shorter alternative transcript BC000332 LTV DN
ATGCCGTGGC 26 mgc_apa 69.1% shorter alternative transcript BC005117 LTV DN
GCGCCAGTTC 52 mgc_apa 69.1% shorter alternative transcript BC000332 LTV DN
GCGCCAGTTC 52 mgc_apa 69.1% shorter alternative transcript BC005117 LTV DN
AAAATATATA 17 fl_sr 67.9% internal tag AK054579 LTV DN
AAAATATATA 17 fl_sr 67.9% internal tag AK055249 LTV DN
AAAATATATA 17 fl_sr 67.9% internal tag X04741 LTV DN
AAGCAGACCA* 23 fl_apa 67.6% shorter alternative transcript AK054579 LTV DN
AAGCAGACCA* 23 fl_apa 67.6% shorter alternative transcript BC006305 LTV DN
AAGCAGACCA* 23 fl_apa 67.6% shorter alternative transcript X04741 LTV DN
ATGCCGTGGC 26 fl_apa 67.6% shorter alternative transcript AB209038 LTV DN
ATGCCGTGGC 26 fl_apa 67.6% shorter alternative transcript AK054579 LTV DN
ATGCCGTGGC 26 fl_apa 67.6% shorter alternative transcript BC006305 LTV DN
ATGCCGTGGC 26 fl_apa 67.6% shorter alternative transcript X04741 LTV DN
ATGTAACCTT 3 fl_apa 67.6% shorter alternative transcript AK055249 LTV DN
GCCTTTAAAT 11 fl_apa 67.6% shorter alternative transcript AB209038 LTV DN
GCGCCAGTTC 52 fl_apa 67.6% shorter alternative transcript AK054579 LTV DN
GCGCCAGTTC 52 fl_apa 67.6% shorter alternative transcript BC006305 LTV DN
GCGCCAGTTC 52 fl_apa 67.6% shorter alternative transcript X04741 LTV DN
TCGCTGCACT* 123 fl_r 66.8% undefined 3' end AB209038 LTV DN

Other Gene(s) Mapping to Above Tag(s)

TagFreq.DatabaseRankVirtual Tag Classification¹AccessionLT
Viewer
Gene
Symbol
NameGene Info
AAGCAGACCA 23 mgc_p5s 76.6% internal tag BC064569 LTV EXOC3 Exocyst complex component 3 Gene Info
TCGCTGCACT 123 fl_p5s 92.8% reliable 3' end BC065011 LTV PYGL Phosphorylase, glycogen, liver Gene Info

Legend

TAG sequence Best tag for search query
¹ Position of virtual tag relative to the longest reliable sequence in database
² Tissues only
Tissues only
Cell lines only
Cell lines only
Tissues + Cell lines
Tissues + Cell lines
* Tag maps to other gene(s)
# Highly repetitive tag