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SAGE Genie
  • Human SAGE Genie Tools
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  • Digital Karyotyping

All Tags in Gene


Search query: TNF (Tumor necrosis factor), Gene Info

List of Tags for Gene

TagFreq.DatabaseRankVirtual Tag Classification¹AccessionLT
Viewer
Digital NorthernSAGE Anatomic Viewer²
TAGCCCCCTG 107 mgc_p5s 94.1% reliable 3' end BC028148 LTV DN
TAGCCCCCTG 107 refseq_sr 90.6% reliable 3' end NM_000594 LTV DN
TAGCCCCCTG 107 fl_sr 89.1% reliable 3' end AJ227911 LTV DN
TAGCCCCCTG 107 fl_sr 89.1% reliable 3' end M10988 LTV DN
TAGCCCCCTG 107 fl_sr 89.1% reliable 3' end X01394 LTV DN
TGCTCCTCAC 3 mgc_ip 77.7% internally primed site BC028148 LTV DN
TGCTCCTCAC 3 refseq_ip 77.2% internally primed site NM_000594 LTV DN
TTTTCCGTGA 3 mgc_p5s 76.6% internal tag BC028148 LTV DN
TGCTCCTCAC 3 fl_ip 75.7% internally primed site M10988 LTV DN
TGCTCCTCAC 3 fl_ip 75.7% internally primed site X01394 LTV DN
TTTTCCGTGA 3 refseq_apa 69.6% shorter alternative transcript NM_000594 LTV DN
TTTTCCGTGA 3 fl_sr 67.9% internal tag M10988 LTV DN
TTTTCCGTGA 3 fl_sr 67.9% internal tag X01394 LTV DN
TACTCCTCAC* 10 fl_r 66.8% undefined 3' end AF043342 LTV DN
TGCTCCTCAC 3 fl_r 66.8% undefined 3' end AB451492 LTV DN
TGCTCCTCAC 3 fl_r 66.8% undefined 3' end AF098751 LTV DN

Other Gene(s) Mapping to Above Tag(s)

TagFreq.DatabaseRankVirtual Tag Classification¹AccessionLT
Viewer
Gene
Symbol
NameGene Info
TACTCCTCAC 10 ug_p5s 66.5% reliable 3' end     Hs.549823 Transcribed locus Gene Info

Legend

TAG sequence Best tag for search query
¹ Position of virtual tag relative to the longest reliable sequence in database
² Tissues only
Tissues only
Cell lines only
Cell lines only
Tissues + Cell lines
Tissues + Cell lines
* Tag maps to other gene(s)
# Highly repetitive tag