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SAGE Genie
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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

All Tags in Gene


Search query: CPT1B (Carnitine palmitoyltransferase 1B (muscle)), Gene Info

List of Tags for Gene

TagFreq.DatabaseRankVirtual Tag Classification¹AccessionLT
Viewer
Digital NorthernSAGE Anatomic Viewer²
AGGGACTTGT* 287 refseq_p5s 95.4% reliable 3' end NM_001145134 LTV DN
AGGGACTTGT* 287 refseq_p5s 95.4% reliable 3' end NM_001145135 LTV DN
AGGGACTTGT* 287 refseq_p5s 95.4% reliable 3' end NM_001145136 LTV DN
AGGGACTTGT* 287 refseq_p5s 95.4% reliable 3' end NM_001145137 LTV DN
AGGGACTTGT* 287 refseq_p5s 95.4% reliable 3' end NM_152245 LTV DN
AGGGACTTGT* 287 mgc_p5s 94.1% reliable 3' end BC142954 LTV DN
AGGGACTTGT* 287 fl_p5s 92.8% reliable 3' end AK223174 LTV DN
AGGGACTTGT* 287 fl_p5s 92.8% reliable 3' end D87812 LTV DN
AGGGACTTGT* 287 refseq_sr 90.6% reliable 3' end NM_004377 LTV DN
AGGGACTTGT* 287 refseq_sr 90.6% reliable 3' end NM_152246 LTV DN
AGGGACTTGT* 287 fl_sr 89.1% reliable 3' end U62733 LTV DN
AGGGACTTGT* 287 fl_sr 89.1% reliable 3' end Y08682 LTV DN
AGGGGTGGCC* 66 fl_sr 89.1% reliable 3' end U66828 LTV DN
AGGGGTGGCC* 66 fl_sr 89.1% reliable 3' end Y08683 LTV DN
ATTGCAGGCG* 5 mgc_p5s 76.6% internal tag BC142954 LTV DN
AGGGGTGGCC* 66 refseq_p5s 75.4% internal tag NM_152245 LTV DN
ATTGCAGGCG* 5 refseq_p5s 75.4% internal tag NM_001145134 LTV DN
ATTGCAGGCG* 5 refseq_p5s 75.4% internal tag NM_001145135 LTV DN
ATTGCAGGCG* 5 refseq_p5s 75.4% internal tag NM_001145136 LTV DN
ATTGCAGGCG* 5 refseq_p5s 75.4% internal tag NM_001145137 LTV DN
ATTGCAGGCG* 5 fl_p5s 73.8% internal tag AK223174 LTV DN
ATTGCAGGCG* 5 fl_p5s 73.8% internal tag D87812 LTV DN
ACCGGGGCAG* 2 refseq_apa 69.6% shorter alternative transcript NM_152246 LTV DN
AGGGGTGGCC* 66 refseq_apa 69.6% shorter alternative transcript NM_004377 LTV DN
ATGGAGGGGT 5 refseq_apa 69.6% shorter alternative transcript NM_152246 LTV DN
ATTGCAGGCG* 5 refseq_apa 69.6% shorter alternative transcript NM_004377 LTV DN
ATTGCAGGCG* 5 refseq_apa 69.6% shorter alternative transcript NM_152245 LTV DN
ATTGCAGGCG* 5 refseq_apa 69.6% shorter alternative transcript NM_152246 LTV DN
TTCGACCCAG* 1 refseq_apa 69.6% shorter alternative transcript NM_152246 LTV DN
ACCGGGGCAG* 2 mgc_apa 69.1% shorter alternative transcript BC142954 LTV DN
ATGGAGGGGT 5 mgc_apa 69.1% shorter alternative transcript BC142954 LTV DN
TTCGACCCAG* 1 mgc_apa 69.1% shorter alternative transcript BC142954 LTV DN
ATTGCAGGCG* 5 fl_sr 67.9% internal tag U62733 LTV DN
ATTGCAGGCG* 5 fl_sr 67.9% internal tag U66828 LTV DN
ATTGCAGGCG* 5 fl_sr 67.9% internal tag Y08682 LTV DN
ATTGCAGGCG* 5 fl_sr 67.9% internal tag Y08683 LTV DN
ACCGGGGCAG* 2 fl_apa 67.6% shorter alternative transcript AK223174 LTV DN
ACCGGGGCAG* 2 fl_apa 67.6% shorter alternative transcript AK291316 LTV DN
ACCGGGGCAG* 2 fl_apa 67.6% shorter alternative transcript D87812 LTV DN
ACCGGGGCAG* 2 fl_apa 67.6% shorter alternative transcript U62733 LTV DN
ACCGGGGCAG* 2 fl_apa 67.6% shorter alternative transcript U66828 LTV DN
ACCGGGGCAG* 2 fl_apa 67.6% shorter alternative transcript Y08682 LTV DN
ACCGGGGCAG* 2 fl_apa 67.6% shorter alternative transcript Y08683 LTV DN
ATGGAGGGGT 5 fl_apa 67.6% shorter alternative transcript AK223174 LTV DN
ATGGAGGGGT 5 fl_apa 67.6% shorter alternative transcript AK291316 LTV DN
ATGGAGGGGT 5 fl_apa 67.6% shorter alternative transcript D87812 LTV DN
ATGGAGGGGT 5 fl_apa 67.6% shorter alternative transcript U62733 LTV DN
ATGGAGGGGT 5 fl_apa 67.6% shorter alternative transcript U66828 LTV DN
ATGGAGGGGT 5 fl_apa 67.6% shorter alternative transcript Y08682 LTV DN
ATGGAGGGGT 5 fl_apa 67.6% shorter alternative transcript Y08683 LTV DN
CGTGGGCAGA* 4 fl_apa 67.6% shorter alternative transcript AK291316 LTV DN
TTCGACCCAG* 1 fl_apa 67.6% shorter alternative transcript AK223174 LTV DN
TTCGACCCAG* 1 fl_apa 67.6% shorter alternative transcript D87812 LTV DN
TTCGACCCAG* 1 fl_apa 67.6% shorter alternative transcript U62733 LTV DN
TTCGACCCAG* 1 fl_apa 67.6% shorter alternative transcript Y08682 LTV DN
ATTGCAGGCG* 5 fl_r 66.8% undefined 3' end AK291316 LTV DN

Other Gene(s) Mapping to Above Tag(s)

TagFreq.DatabaseRankVirtual Tag Classification¹AccessionLT
Viewer
Gene
Symbol
NameGene Info
ACCGGGGCAG 2 refseq_apa 69.6% shorter alternative transcript NM_152247 LTV      
ACCGGGGCAG 2 refseq_apa 69.6% shorter alternative transcript NM_152253 LTV      
ACCGGGGCAG 2 mgc_apa 69.1% shorter alternative transcript BC131570 LTV      
ACCGGGGCAG 2 fl_apa 67.6% shorter alternative transcript AB051457 LTV      
AGGGACTTGT 287 refseq_sr 90.6% reliable 3' end NM_152247 LTV      
AGGGACTTGT 287 refseq_sr 90.6% reliable 3' end NM_152253 LTV      
AGGGACTTGT 287 fl_sr 89.1% reliable 3' end AB051457 LTV      
AGGGGTGGCC 66 refseq_apa 69.6% shorter alternative transcript NM_152247 LTV      
AGGGGTGGCC 66 refseq_apa 69.6% shorter alternative transcript NM_152253 LTV      
AGGGGTGGCC 66 fl_sr 67.9% internal tag AB051457 LTV      
ATTGCAGGCG 5 refseq_apa 69.6% shorter alternative transcript NM_152247 LTV      
ATTGCAGGCG 5 fl_r 66.8% undefined 3' end BC131570 LTV      
CGTGGGCAGA 4 mgc_apa 69.1% shorter alternative transcript BC131570 LTV      
TTCGACCCAG 1 refseq_apa 69.6% shorter alternative transcript NM_152253 LTV      
TTCGACCCAG 1 mgc_apa 69.1% shorter alternative transcript BC131570 LTV      
TTCGACCCAG 1 fl_apa 67.6% shorter alternative transcript AB051457 LTV      

Legend

TAG sequence Best tag for search query
¹ Position of virtual tag relative to the longest reliable sequence in database
² Tissues only
Tissues only
Cell lines only
Cell lines only
Tissues + Cell lines
Tissues + Cell lines
* Tag maps to other gene(s)
# Highly repetitive tag