Brief Summary of Ludwig Transcript (LT) Viewer
Below is a visual representation of a particular transcript with, at most, four possible virtual SAGE tag locations, starting from the 3' end. Transcripts which overlap this longer transcript are positioned on the display and annotated as either internally primed or alternatively polyadenylated. In addition, there is a table containing information on the influence of Single Nucleotide Polymorphisms (SNPs) in the generation of alternative tags
#4 #3 #2 #1 5' 3' bp number: 1 606 1287 1430 1471 1676
No IP for this gene.
PA transcripts: AW449538
No SNP-Associated Alternative Tag for this gene.
Tag Info SummaryThe table below summarizes the tag information from above. The tag link enables the user to see which other gene(s) may be represented by the particular tag and the reliability of each mapping. Be aware that it is possible that an internal tag from one gene might, on occasion, have a better match to a different gene and thus the tag frequency is possibly the sum of more than one gene.
Tag Tag Sequence Tag Position BP Number Tag Freq TAGCCCCCTG 1 1471 108 TTTTCCGTGA 2 1430 3 GAGCCAGCTC 3 1287 17 TGCTCCTCAC 4 606 3
- corresponds to A-rich regions, defined as an internal stretch of eight adenosines within a 10 bp region.
- IP transcripts are "probably" derived from an internal priming of an internal A-rich region.
- PA transcripts are sequences that have a polyA signal and a poyA tail and therefore are "probably" derived from alternative polyadenylation.