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SAGE Genie
  • Human SAGE Genie Tools
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  • Digital Karyotyping
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Best Gene for Tag

Search query:

TagFreq.Digital NorthernSAGE Anatomic Viewer²
CAAACCATCC 5749 DN
Best Gene for Tag

Gene
Symbol
NameDatabaseRankVirtual Tag Classification¹AccessionLT
Viewer
Gene Info
KRT18 Keratin 18 refseq_p5s 95.4% reliable 3' end NM_000224 LTV Gene Info
View all tags for gene

Other Gene(s) for Tag

Gene
Symbol
NameDatabaseRankVirtual Tag Classification¹AccessionLT
Viewer
Gene Info
LOC729678 Uncharacterized LOC729678 fl_sr 89.1% reliable 3' end AK095170 LTV Gene Info
KRT18P55 Keratin 18 pseudogene 55 fl_sr 89.1% reliable 3' end AK097823 LTV Gene Info
    fl_sr 89.1% reliable 3' end XR_016871 LTV  
    fl_sr 89.1% reliable 3' end XR_019231 LTV  
ANKRD13C Ankyrin repeat domain 13C refseq_apa 69.6% shorter alternative transcript NM_030816 LTV Gene Info
    fl_r 66.8% undefined 3' end XR_017211 LTV  
    fl_r 66.8% undefined 3' end XR_019198 LTV  

Legend

¹ Position of virtual tag relative to the longest reliable sequence in database
² Tissues only
Tissues only
Cell lines only
Cell lines only
Tissues + Cell lines
Tissues + Cell lines
* Tag maps to other gene(s)
# Highly repetitive tag