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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Vps35, Vacuolar protein sorting 35
Sequence ID:NM_022997
Entrez Gene ID:65114
Ensembl ID:ENSMUSG00000031696

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 C3|8 38.0

Chromosomal Position (from UCSC)

Chromosomal Position:8: 85260393 - 85299516

 Exon Info From UCSC:
NM_022997

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3492842Full LengthBC005469vacuolar protein sorting 35
3969440Full LengthBC006637vacuolar protein sorting 35

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_075373  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022997 NP_075373 Q9EQH3
Q3TRJ1
Vps35

Related Sequences

 
mRNAGenPeptSwissProt
U47024 AAB18153 Q9EQH3
AF226323 AAG40621 Q9EQH3
Q3TRJ1
BC005469 AAH05469 Q9EQH3
Q3TRJ1
BC006637 AAH06637 Q9EQH3
Q3TRJ1
AK142382 BAE25050 Q3UQJ1
AK150682 BAE29762 Q9EQH3
Q3TRJ1
AK160547 BAE35864 Q3TUV7
AK162726 BAE37038 Q9EQH3
Q3TRJ1
AK166821 BAE39047 Q3TKU6
AK167421 BAE39509 Q9EQH3
Q3TRJ1
AK167594 BAE39652 Q3TJ43
AK168880 BAE40698 Q9EQH3
Q3TRJ1
AK170473 BAE41818 Q9EQH3
Q3TRJ1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vps35 NP_075373 R.norvegicus Vps35 25479   NP_001099188 100
H.sapiens VPS35 55737 Gene Info NP_060676 99
A.gambiae AgaP_AGAP007683 1269546   XP_308188 65
D.melanogaster Vps35 37536   NP_611651 63
C.elegans vps-35 174000   NP_495180 50
N.crassa NCU06284 3878721   XP_962546 47
A.thaliana VPS35B 843918   NP_177713 45
S.cerevisiae VPS35 853287   NP_012381 38
S.pombe vps35 2539462   NP_588260 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)