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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. APOA1, Apolipoprotein A-I
Sequence ID:NM_000039
RefSeqGene ID:NG_012021
Entrez Gene ID:335
Ensembl ID:ENSG00000118137

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
AMYLOIDOSIS, 3 OR MORE TYPESFGA
LYZ
HDL DEFICIENCY, TYPE 2ABCA1

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23-q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 116706469 - 116708340

NM_000039 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1659116706468116707126
660816116707716116707872
817879116708060116708122
880897116708320116708337

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3934992Full LengthBC005380apolipoprotein A-I
5164525Full LengthBC110286apolipoprotein A-I

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000030  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000039 NP_000030 P02647 Apolipoprotein

Related Sequences

 
mRNAGenPeptSwissProt
M11791 AAA35545 P02647
M29068 AAA51747 P02647
M27875 AAA62829 P02647
BC005380 AAH05380 P02647
BC110286 AAI10287 P02647
DQ893073 ABM83999  
DQ896330 ABM87329  
AK292231 BAF84920 P02647
A14829 CAA01198 P02647
A15879 CAA01253  
X00566 CAA25232 P02647
X02162 CAA26097 P02647

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens APOA1 NP_000030 M.musculus Apoa1 11806 Gene Info NP_033822 66

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

NCI-Nature Pathway Interaction Database

BioCarta Pathways
Pathway information courtesy of BioCarta