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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RARA, Retinoic acid receptor, alpha
Sequence ID:NM_001024809
NM_001145301
NM_000964
NM_001145302
RefSeqGene ID:NG_027701
Entrez Gene ID:5914
Ensembl ID:ENSG00000131759

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 38499055 - 38504691

 Exon Info From UCSC:
NM_001024809
NM_001145301
NM_000964
NM_001145302

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3163891Full LengthBC008727retinoic acid receptor, alpha
5217484Full LengthBC071733retinoic acid receptor, alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001019980  NP_000955  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000964 NP_000955 Q6I9R7
P10276
Hormone_recep
zf-C4
NM_001024809 NP_001019980   Hormone_recep
zf-C4
NM_001145301 NP_001138773    
NM_001145302 NP_001138774    

Related Sequences

 
mRNAGenPeptSwissProt
S50916 AAB19602  
BC008727 AAH08727 Q6I9R7
P10276
BC071733 AAH71733 P10276
DQ893531 ABM84457  
DQ893744 ABM84670  
FJ487576 ACK86665 P10276
HQ692826 ADZ17337 Q6I9R7
HQ692827 ADZ17338 F1D8N9
AK292205 BAF84894 A8K840
AK312564 BAG35459 Q6I9R7
AK098172 BAG53585 B3KUX3
AK303868 BAG64806 B4E1J4
X06538 CAA29787 P10276
X06614 CAA29829 Q6I9R7
P10276
X58685 CAA39533 P10276
X58685 CAA41532 P10276
CR457438 CAG33719 Q6I9R7
P10276
AL834159 CAH56277 Q658K5
XM_001719722 XP_001719774  
XM_001725711 XP_001725763  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RARA NP_001019980 M.musculus Rara 19401 Gene Info NP_001169999 98
R.norvegicus Rara 24705   NP_113716 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

NCI-Nature Pathway Interaction Database

BioCarta Pathways
Pathway information courtesy of BioCarta