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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. BDNF, brain-derived neurotrophic factor
Sequence ID:NM_001143805
NM_001143806
NM_001143807
NM_001143808
NM_001143809
NM_001143810
NM_001143811
NM_001143812
NM_001143813
NM_001143814
NM_001143816
NM_001709
NM_170731
NM_170732
NM_170733
NM_170734
NM_170735
NM_001143815
RefSeqGene ID:NG_011794
Entrez Gene ID:627
Ensembl ID:ENSG00000176697

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
ANOREXIA NERVOSAHTR2A
ANOREXIA NERVOSA 
BULIMIA NERVOSA, AGE OF ONSET OF WEIGHT LOSS IN 
CENTRAL HYPOVENTILATION SYNDROMEASCL1
EDN3
GDNF
PHOX2B
RET
OBSESSIVE-COMPULSIVE DISORDERHTR2A
SLC6A4
SLC6A4

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 27679970 - 27743275

 Exon Info From UCSC:
NM_001143805
NM_001143806
NM_001143807
NM_001143808
NM_001143809
NM_001143810
NM_001143811
NM_001143812
NM_001143813
NM_001143814
NM_001143816
NM_001709
NM_170731
NM_170732
NM_170733
NM_170734
NM_170735

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5193877Full LengthBC029795brain-derived neurotrophic factor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_733931  NP_733930  NP_733928  NP_001700  NP_733927  NP_733929  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001143805 NP_001137277    
NM_001143806 NP_001137278    
NM_001143807 NP_001137279    
NM_001143808 NP_001137280    
NM_001143809 NP_001137281    
NM_001143810 NP_001137282    
NM_001143811 NP_001137283    
NM_001143812 NP_001137284    
NM_001143813 NP_001137285    
NM_001143814 NP_001137286    
NM_001143816 NP_001137288    
NM_001709 NP_001700 P23560 NGF
NM_170731 NP_733927   NGF
NM_170732 NP_733928 P23560 NGF
NM_170733 NP_733929 P23560 NGF
NM_170734 NP_733930   NGF
NM_170735 NP_733931 P23560 NGF

Related Sequences

 
mRNAGenPeptSwissProt
M61176 AAA69805 P23560
BC029795 AAH29795 P23560
AF400438 AAK92487 P23560
AY054392 AAL23557 P23560
AY054393 AAL23558 P23560
AY054394 AAL23559 P23560
AY054395 AAL23560 P23560
AY054396 AAL23561 P23560
AY054397 AAL23562 P23560
AY054398 AAL23563 P23560
AY054399 AAL23564 P23560
AY054400 AAL23565 P23560
AY054406 AAL23571 Q6YNR1
AY442188 AAR14686 Q6T2C9
AY656701 AAT74399 P23560
DQ250642 ABB51155 Q304R1
DQ890811 ABM81737  
DQ893966 ABM84892  
EF674517 ABS29021 P23560
EF674518 ABS29022 P23560
EF674519 ABS29023 P23560
EF674520 ABS29024 P23560
EF674521 ABS29025 P23560
EF689009 ABS32249 P23560
EF689010 ABS32250 P23560
EF689011 ABS32251 P23560
EF689012 ABS32252 P23560
EF689013 ABS32253 P23560
EF689014 ABS32254 P23560
EF689015 ABS32255 P23560
EF689016 ABS32256 P23560
EF689017 ABS32257 P23560
EF689018 ABS32258 P23560
EF689019 ABS32259 P23560
EF689020 ABS32260 P23560
EF689021 ABS32261 P23560
AB038670 BAB55545 Q969N8
AB038671 BAB55546 Q96TC2
AB038672 BAB55547 Q969N8
AB038673 BAB55548 Q969N8
AB038674 BAB55549 Q969N8
AK289763 BAF82452 P23560
AK289853 BAF82542 P23560
X60201 CAA42761 P23560
X91251 CAA62632 P23560

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BDNF NP_001137282 M.musculus Bdnf 12064 Gene Info NP_031566 98
R.norvegicus Bdnf 24225   NP_036645 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

NCI-Nature Pathway Interaction Database