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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CST3, Cystatin C
Sequence ID:NM_000099
RefSeqGene ID:NG_012887
Entrez Gene ID:1471
Ensembl ID:ENSG00000101439

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
CEREBRAL AMYLOID ANGIOPATHY 
MACULAR DEGENERATION,AGE-RELATED, 11 

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 23618395 - 23618547

NM_000099 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
443862361429323614635
3875002361589023616003
5018182361825623618573

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4153023Full LengthBC013083cystatin C
5248305Full LengthBC110305cystatin C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000090  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000099 NP_000090 P01034 Cystatin

Related Sequences

 
mRNAGenPeptSwissProt
BC013083 AAH13083 P01034
BC110305 AAI10306 P01034
BT006839 AAP35485 P01034
DQ891439 ABM82365  
EU176584 ABW03385  
AK312213 BAG35146 P01034
AB587083 BAJ83816 E9RH26
X05607 CAA29096 P01034
CR541988 CAG46785 P01034
CR542018 CAG46815 P01034

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CST3 NP_000090 R.norvegicus Cst3 25307   NP_036969 74
M.musculus Cst3 13010 Gene Info NP_034106 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)